Skip to content

Commit 69121f4

Browse files
committed
Update readme
1 parent a9b447e commit 69121f4

1 file changed

Lines changed: 27 additions & 30 deletions

File tree

README.md

Lines changed: 27 additions & 30 deletions
Original file line numberDiff line numberDiff line change
@@ -5,93 +5,90 @@ permalink: /
55
description: Data exchange format for geolocator data
66
---
77

8-
**GeoLocator Data Package** (GeoLocator DP) is a data exchange format for geolocator data. It follows the [Data Package standard](https://datapackage.org/standard/data-package/) for the structuring of the data.
8+
**GeoLocator Data Package** (GeoLocator DP) is a data exchange format for geolocator data. It follows the [Data Package standard](https://datapackage.org/standard/data-package/) for structuring the data.
99

10-
A geolocator data package consists of three sets of data: (1) the metadata of the project, (2) the core resources containing the main dataset and (3) optional trajectory data generated with the [GeoPressure suite](https://raphaelnussbaumer.com/GeoPressureManual/#the-geopressure-suite).
10+
## Structure
1111

12-
## 1. Metadata
12+
A GeoLocator Data Package is organized into three components: (1) the project metadata, (2) the core resources containing the main dataset, and (3) optional trajectory data generated with the [GeoPressure suite](https://raphaelnussbaumer.com/GeoPressureManual/#the-geopressure-suite).
1313

14-
The description of project and the data is contained in [`datapackage.json`](https://raphaelnussbaumer.com/GeoLocator-DP/datapackage/).
14+
### 1. Metadata
1515

16-
| File | Description |
17-
| ------------------------------------------------------------------------------ | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
18-
| [`datapackage.json`](https://raphaelnussbaumer.com/GeoLocator-DP/datapackage/) | List of the project's metadata such as the package's title, licences, contributors etc. as well as a list of the data [`resources`](https://datapackage.org/standard/data-resource/) that make up the package |
16+
The description of the project and the data is contained in [`datapackage.json`](https://raphaelnussbaumer.com/GeoLocator-DP/datapackage/).
1917

20-
## 2. Core Resources
18+
| File | Description |
19+
| ------------------------------------------------------------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
20+
| [`datapackage.json`](https://raphaelnussbaumer.com/GeoLocator-DP/datapackage/) | List of the project's metadata, such as the package's title, licenses, contributors, etc., as well as a list of the data [`resources`](https://datapackage.org/standard/data-resource/) that make up the package |
21+
22+
### 2. Core Resources
2123

2224
The core GeoLocator DP resources consist of the raw geolocator data. These `resources` can be generated without any analysis of the geolocator data.
2325

24-
| File | Description |
25-
| ------------------------------------------------------------------------------------ | ------------------------------------------------------------------------------------------------------ |
26-
| [`tags.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/core/tags/) | Table of devices used in the study. We assume that a `tag` is only used once on a single animal. |
27-
| [`measurements.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/core/measurements/) | Table with the raw measurements of all sensors (e.g., light, pressure, ...) for all tags. |
28-
| [`observations.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/core/observations/) | Table with the field observations associated with tags such as equipment, retrieval, or others events. |
26+
| File | Description |
27+
| ------------------------------------------------------------------------------------ | ----------------------------------------------------------------------------------------------------- |
28+
| [`tags.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/core/tags/) | Table of devices used in the study. We assume that a `tag` is only used once on a single animal. |
29+
| [`measurements.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/core/measurements/) | Table with the raw measurements of all sensors (e.g., light, pressure, ...) for all tags. |
30+
| [`observations.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/core/observations/) | Table with the field observations associated with tags such as equipment, retrieval, or other events. |
2931

30-
## 3. GeoPressureR Resources
32+
### 3. GeoPressureR Resources
3133

32-
The GeoPressureR extensions consists of optional trajectory data generated through the GeoPressureR workflow analysis[](https://raphaelnussbaumer.com/GeoPressureManual/geopressuretemplate-workflow.html).
34+
The GeoPressureR extension consists of optional trajectory data generated through the [GeoPressureR workflow analysis](https://raphaelnussbaumer.com/GeoPressureManual/geopressuretemplate-workflow.html).
3335

3436
| File | Description |
3537
| --------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------ |
3638
| [`staps.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/geopressurer/staps) | Table of the stationary periods of all tags. |
3739
| [`paths.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/geopressurer/paths) | Table of the trajectory of all tags, typically most likely path or simulation paths. |
3840
| [`edges.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/geopressurer/edges) | Table containing the flight information of the edges associated with the paths. |
3941
| [`twilights.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/geopressurer/twilights) | Table of the twilights estimated from light data for all tags. |
40-
| [`pressurepaths.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/geopressurer/pressurepaths) | Table of the pressurepaths |
42+
| [`pressurepaths.csv`](https://raphaelnussbaumer.com/GeoLocator-DP/geopressurer/pressurepaths) | Table of pressure-based paths. |
4143

42-
## Examples
44+
## Where to find and explore GeoLocator Data Packages
4345

4446
<table>
4547
<tr style="border-top-width: 1px;">
4648
<td>
4749
<a href="https://zenodo.org/communities/geolocator-dp/"><img src="assets/logo.png" width="100px" alt="GeoLocator DP logo"/> </a>
4850
</td>
4951
<td>
50-
You'll be able to find all GeoLocator Data Package in the <a href="https://zenodo.org/communities/geolocator-dp/">GeoLocator Data Package Zenodo Community</a>. Once you've published you datapackage, make sure to <a href="https://help.zenodo.org/docs/share/submit-to-community/">submit it to the community</a>.
52+
You'll be able to find all GeoLocator Data Packages in the <a href="https://zenodo.org/communities/geolocator-dp/">GeoLocator Data Package Zenodo Community</a>. Once you've published your data package, make sure to <a href="https://help.zenodo.org/docs/share/submit-to-community/">submit it to the community</a>.
5153
</td>
5254
</tr>
5355
<tr>
5456
<td>
5557
<a href="https://raphaelnussbaumer.com/GeoLocatorExplorer/"><img src="assets/logo_geolocatorexplorer.svg" width="100px" alt="GeoLocatorExplorer logo"/> </a>
5658
</td>
5759
<td>
58-
Explore the most likely trajectories of all existing datapackage on a 3D map with <a href="https://raphaelnussbaumer.com/GeoLocatorExplorer/">GeoLocatorExplorer</a>.
60+
Explore the most likely trajectories of all existing data packages on a 3D map with <a href="https://raphaelnussbaumer.com/GeoLocatorExplorer/">GeoLocatorExplorer</a>.
5961
</td>
6062
</tr>
6163
</table>
6264

63-
## User guides
65+
## Ecosystem
6466

6567
<table>
6668
<tr style="border-top-width: 1px;">
6769
<td>
6870
<a href="https://raphaelnussbaumer.com/GeoPressureManual/geolocator-intro.html"><img src="assets/cover_geopressuremanual.png" width="100px" alt="GeoPressureManual logo"/></a>
6971
</td>
7072
<td>
71-
The <a href="https://raphaelnussbaumer.com/GeoPressureManual/geolocator-intro.html">GeolocatorManual</a> R book has a dedicated part on the use of Geolocator Data Package. This is a great place to start learning more on how to use it with your GeoPressureTemplate project.
73+
The <a href="https://raphaelnussbaumer.com/GeoPressureManual/geolocator-intro.html">Geolocator Manual</a> R book has a dedicated part on the use of the GeoLocator Data Package. This is a great place to start learning more about how to use it with your GeoPressureTemplate project.
7274
</td>
7375
</tr>
74-
</table>
75-
76-
## Software
77-
78-
<table >
79-
<tr style="border-top-width: 1px;">
76+
<tr>
8077
<td>
8178
<a href="https://raphaelnussbaumer.com/GeoLocatoR/"><img src="assets/logo_geolocator.png" width="100px" alt="GeoLocatoR logo"/></a>
8279
</td>
8380
<td>
84-
The <a href="https://raphaelnussbaumer.com/GeoLocatoR/">GeoLocatoR</a> R package is designed to handle GeoLocator DP: creating DP, adding resources to DP, writing DP and reading DP. It is essentially an extension of the <a href="https://docs.ropensci.org/frictionless/">frictionlessr</a> package for geolocator data.
81+
The <a href="https://raphaelnussbaumer.com/GeoLocatoR/">GeoLocatoR</a> R package is designed to handle GeoLocator DP: creating a DP, adding resources, writing a DP, and reading a DP. It is essentially an extension of the <a href="https://docs.ropensci.org/frictionless/">frictionlessr</a> package for geolocator data.
8582
</td>
8683
</tr>
8784
<tr>
8885
<td><a href="https://raphaelnussbaumer.com/GeoPressureR/"><img src="assets/logo_geopressurer.png" width="100px" alt="GeoPressureR logo"/></a></td>
8986
<td>
90-
<a href="https://raphaelnussbaumer.com/GeoPressureR/">GeoPressureR</a> is the main package to analyse geolocator data. Once a Geolocator data package is created, GeoPressureR is our recommended software to read the data into R and analyse the data.
87+
<a href="https://raphaelnussbaumer.com/GeoPressureR/">GeoPressureR</a> is the main package to analyze geolocator data. Once a GeoLocator Data Package is created, GeoPressureR is our recommended software to read the data into R and analyze the data.
9188
</td>
9289
</tr>
9390
</table>
9491

95-
## How to cite
92+
## How to Cite
9693

9794
> Nussbaumer, R. (2024). GeoLocator Data Package. Zenodo. [10.5281/zenodo.14258411](https://doi.org/10.5281/zenodo.14258411)

0 commit comments

Comments
 (0)