Merge Devel pre v4 to sc_spatial_wrapper#573

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ch99l wants to merge 11 commits intosc_spatial_wrapperfrom

Commits on Apr 15, 2026

fix: adjust NDR threshold behavior. Previously, NDR = 1 would override `remove.subset` and `min.sampleNumber`. Now, NDR = 0.999 and NDR = 1 produce identical results except for the NDR threshold it…
SuiYue-2308
committed
Move min.exonDistance, min.primarySecondaryDist, min.primarySecondaryDistStartEnd1/2 from opt.discovery into a new opt.rcAssignment parameter with its own setRcAssignmentParameters().
SuiYue-2308
committed

Commits on Apr 16, 2026

Commits on Apr 17, 2026