TEs_Evolve-and-Resequencing

FOLDER	INFO
01.significant_TEs_TEMP-and-TIDAL	#For finding those TEs detected by TEMP and TIDAL, comparing the TEs between pools and testing the significance of the increase/decresase in frequency
02.significant_TEs_TEMP	#For finding those TEs detected only by TEMP, comparing the TEs between pools and testing the significance of the increase/decresase in frequency
03.griffin_single_pool	#For detecting those TEs only present in a single control or selection pool in the Griffin study and test if the frequencies of the TEs only present in a single selection pool are significantly different from those only present in a single control pool
04.genomic_features	#For getting D. melanogaster genomic features
05.chromosome_features_TE_families_enrichment	#For testing the enrichment of different chromosomes, genomic features and different TE families
06.GO_enrichment	#For performing the GO enrichment analysis