java-jsi-clus-fire: put back MODEL_PARAM_size and MODEL_PARAM_rules as environment variables for tests

Author: mirco-nasuti

java-jsi-clus-fire/tests/docker-compose.yml

@@ -85,6 +85,8 @@ services:
       PARAM_covariables: "subjectageyears,rightsogsuperioroccipitalgyrus"
       PARAM_query: "SELECT minimentalstate,subjectageyears,rightsogsuperioroccipitalgyrus FROM cde_features_a WHERE minimentalstate IS NOT NULL AND subjectageyears IS NOT NULL AND rightsogsuperioroccipitalgyrus IS NOT NULL AND dataset IN ('desd-synthdata') EXCEPT ALL (SELECT minimentalstate,subjectageyears,rightsogsuperioroccipitalgyrus FROM cde_features_a WHERE minimentalstate IS NOT NULL AND subjectageyears IS NOT NULL AND rightsogsuperioroccipitalgyrus IS NOT NULL AND dataset IN ('desd-synthdata') OFFSET 349 LIMIT 349)"
       PARAM_meta: "{\"rightsogsuperioroccipitalgyrus\":{\"description\":\"\",\"methodology\":\"lren-nmm-volumes\",\"label\":\"Right superior occipital gyrus\",\"code\":\"rightsogsuperioroccipitalgyrus\",\"units\":\"cm3\",\"type\":\"real\"},\"subjectageyears\":{\"description\":\"Subject age in years.\",\"methodology\":\"mip-cde\",\"label\":\"Age Years\",\"minValue\":0,\"code\":\"subjectageyears\",\"units\":\"years\",\"length\":3,\"maxValue\":130.0,\"type\":\"integer\"},\"minimentalstate\":{\"description\":\"The Mini–Mental State Examination (MMSE) or Folstein test is a 30-point questionnaire that is used extensively in clinical and research settings to measure cognitive impairment. It is commonly used to screen for dementia.\",\"methodology\":\"mip-cde\",\"label\":\"MMSE - Mini Mental State Examination\",\"minValue\":0,\"code\":\"minimentalstate\",\"maxValue\":30.0,\"type\":\"integer\"}}"
+      MODEL_PARAM_size: 10
+      MODEL_PARAM_rules: 15
 
   pfa_validator_regression_st:
     image: "hbpmip/pfa-validator:0.10.1-2"
@@ -132,6 +134,8 @@ services:
 #       PARAM_covariables: "rightsogsuperioroccipitalgyrus,leftsogsuperioroccipitalgyrus"
 #       PARAM_query: "SELECT minimentalstate,subjectageyears,rightsogsuperioroccipitalgyrus,leftsogsuperioroccipitalgyrus FROM cde_features_a WHERE minimentalstate IS NOT NULL AND subjectageyears IS NOT NULL AND rightsogsuperioroccipitalgyrus IS NOT NULL AND leftsogsuperioroccipitalgyrus IS NOT NULL AND dataset IN ('desd-synthdata') EXCEPT ALL (SELECT minimentalstate,subjectageyears,rightsogsuperioroccipitalgyrus,leftsogsuperioroccipitalgyrus FROM cde_features_a WHERE minimentalstate IS NOT NULL AND subjectageyears IS NOT NULL AND rightsogsuperioroccipitalgyrus IS NOT NULL AND rightsogsuperioroccipitalgyrus IS NOT NULL AND dataset IN ('desd-synthdata') OFFSET 349 LIMIT 349)"
 #       PARAM_meta: "{\"leftsogsuperioroccipitalgyrus\":{\"description\":\"\",\"methodology\":\"lren-nmm-volumes\",\"label\":\"Left superior occipital gyrus\",\"code\":\"leftsogsuperioroccipitalgyrus\",\"units\":\"cm3\",\"type\":\"real\"},\"rightsogsuperioroccipitalgyrus\":{\"description\":\"\",\"methodology\":\"lren-nmm-volumes\",\"label\":\"Right superior occipital gyrus\",\"code\":\"rightsogsuperioroccipitalgyrus\",\"units\":\"cm3\",\"type\":\"real\"},\"subjectageyears\":{\"description\":\"Subject age in years.\",\"methodology\":\"mip-cde\",\"label\":\"Age Years\",\"minValue\":0,\"code\":\"subjectageyears\",\"units\":\"years\",\"length\":3,\"maxValue\":130.0,\"type\":\"integer\"},\"minimentalstate\":{\"description\":\"The Mini–Mental State Examination (MMSE) or Folstein test is a 30-point questionnaire that is used extensively in clinical and research settings to measure cognitive impairment. It is commonly used to screen for dementia.\",\"methodology\":\"mip-cde\",\"label\":\"MMSE - Mini Mental State Examination\",\"minValue\":0,\"code\":\"minimentalstate\",\"maxValue\":30.0,\"type\":\"integer\"}}"
+#       MODEL_PARAM_size: 10
+#       MODEL_PARAM_rules: 15
 #
 #   pfa_validator_regression_mt:
 #     image: "hbpmip/pfa-validator:0.10.1-2"