Merge pull request LREN-CHUV#51 from LREN-CHUV/fix-heatmaply

Fix r-heatmaply image

Author: ludovicc

r-heatmaply/Dockerfile

@@ -15,92 +15,94 @@ RUN wget https://github.com/jgm/pandoc/releases/download/2.1.1/pandoc-2.1.1-1-am
 RUN dpkg -i pandoc-2.1.1-1-amd64.deb
 
 # copy heatmaply and svglite and their dependencies
-COPY --from=r-build-env /usr/local/lib/R/site-library/assertthat/ /usr/local/lib/R/site-library/assertthat    
-COPY --from=r-build-env /usr/local/lib/R/site-library/base64enc/ /usr/local/lib/R/site-library/base64enc      
-COPY --from=r-build-env /usr/local/lib/R/site-library/BH/ /usr/local/lib/R/site-library/BH                    
-COPY --from=r-build-env /usr/local/lib/R/site-library/bindr/ /usr/local/lib/R/site-library/bindr              
-COPY --from=r-build-env /usr/local/lib/R/site-library/bindrcpp/ /usr/local/lib/R/site-library/bindrcpp        
-COPY --from=r-build-env /usr/local/lib/R/site-library/bitops/ /usr/local/lib/R/site-library/bitops            
-COPY --from=r-build-env /usr/local/lib/R/site-library/caTools/ /usr/local/lib/R/site-library/caTools          
-COPY --from=r-build-env /usr/local/lib/R/site-library/cli/ /usr/local/lib/R/site-library/cli                  
-COPY --from=r-build-env /usr/local/lib/R/site-library/colorspace/ /usr/local/lib/R/site-library/colorspace    
-COPY --from=r-build-env /usr/local/lib/R/site-library/crayon/ /usr/local/lib/R/site-library/crayon            
-COPY --from=r-build-env /usr/local/lib/R/site-library/crosstalk/ /usr/local/lib/R/site-library/crosstalk      
-COPY --from=r-build-env /usr/local/lib/R/site-library/curl/ /usr/local/lib/R/site-library/curl                
-COPY --from=r-build-env /usr/local/lib/R/site-library/data.table/ /usr/local/lib/R/site-library/data.table    
-COPY --from=r-build-env /usr/local/lib/R/site-library/debugme/ /usr/local/lib/R/site-library/debugme          
-COPY --from=r-build-env /usr/local/lib/R/site-library/dendextend/ /usr/local/lib/R/site-library/dendextend    
-COPY --from=r-build-env /usr/local/lib/R/site-library/DEoptimR/ /usr/local/lib/R/site-library/DEoptimR        
-COPY --from=r-build-env /usr/local/lib/R/site-library/dichromat/ /usr/local/lib/R/site-library/dichromat      
-COPY --from=r-build-env /usr/local/lib/R/site-library/digest/ /usr/local/lib/R/site-library/digest            
-COPY --from=r-build-env /usr/local/lib/R/site-library/diptest/ /usr/local/lib/R/site-library/diptest          
-COPY --from=r-build-env /usr/local/lib/R/site-library/dplyr/ /usr/local/lib/R/site-library/dplyr              
-COPY --from=r-build-env /usr/local/lib/R/site-library/flexmix/ /usr/local/lib/R/site-library/flexmix          
-COPY --from=r-build-env /usr/local/lib/R/site-library/foreach/ /usr/local/lib/R/site-library/foreach          
-COPY --from=r-build-env /usr/local/lib/R/site-library/fpc/ /usr/local/lib/R/site-library/fpc                  
-COPY --from=r-build-env /usr/local/lib/R/site-library/gclus/ /usr/local/lib/R/site-library/gclus              
-COPY --from=r-build-env /usr/local/lib/R/site-library/gdata/ /usr/local/lib/R/site-library/gdata              
-COPY --from=r-build-env /usr/local/lib/R/site-library/gdtools/ /usr/local/lib/R/site-library/gdtools          
-COPY --from=r-build-env /usr/local/lib/R/site-library/ggplot2/ /usr/local/lib/R/site-library/ggplot2          
-COPY --from=r-build-env /usr/local/lib/R/site-library/glue/ /usr/local/lib/R/site-library/glue                
-COPY --from=r-build-env /usr/local/lib/R/site-library/gplots/ /usr/local/lib/R/site-library/gplots            
-COPY --from=r-build-env /usr/local/lib/R/site-library/gridExtra/ /usr/local/lib/R/site-library/gridExtra      
-COPY --from=r-build-env /usr/local/lib/R/site-library/gtable/ /usr/local/lib/R/site-library/gtable            
-COPY --from=r-build-env /usr/local/lib/R/site-library/gtools/ /usr/local/lib/R/site-library/gtools            
-COPY --from=r-build-env /usr/local/lib/R/site-library/heatmaply/ /usr/local/lib/R/site-library/heatmaply      
-COPY --from=r-build-env /usr/local/lib/R/site-library/hexbin/ /usr/local/lib/R/site-library/hexbin            
-COPY --from=r-build-env /usr/local/lib/R/site-library/htmltools/ /usr/local/lib/R/site-library/htmltools      
-COPY --from=r-build-env /usr/local/lib/R/site-library/htmlwidgets/ /usr/local/lib/R/site-library/htmlwidgets  
-COPY --from=r-build-env /usr/local/lib/R/site-library/httpuv/ /usr/local/lib/R/site-library/httpuv            
-COPY --from=r-build-env /usr/local/lib/R/site-library/httr/ /usr/local/lib/R/site-library/httr                
-COPY --from=r-build-env /usr/local/lib/R/site-library/iterators/ /usr/local/lib/R/site-library/iterators      
-COPY --from=r-build-env /usr/local/lib/R/site-library/jsonlite/ /usr/local/lib/R/site-library/jsonlite        
-COPY --from=r-build-env /usr/local/lib/R/site-library/kernlab/ /usr/local/lib/R/site-library/kernlab          
-COPY --from=r-build-env /usr/local/lib/R/site-library/labeling/ /usr/local/lib/R/site-library/labeling        
-COPY --from=r-build-env /usr/local/lib/R/site-library/lazyeval/ /usr/local/lib/R/site-library/lazyeval        
-COPY --from=r-build-env /usr/local/lib/R/site-library/magrittr/ /usr/local/lib/R/site-library/magrittr        
-COPY --from=r-build-env /usr/local/lib/R/site-library/mclust/ /usr/local/lib/R/site-library/mclust            
-COPY --from=r-build-env /usr/local/lib/R/site-library/mime/ /usr/local/lib/R/site-library/mime                
-COPY --from=r-build-env /usr/local/lib/R/site-library/modeltools/ /usr/local/lib/R/site-library/modeltools    
-COPY --from=r-build-env /usr/local/lib/R/site-library/munsell/ /usr/local/lib/R/site-library/munsell          
-COPY --from=r-build-env /usr/local/lib/R/site-library/mvtnorm/ /usr/local/lib/R/site-library/mvtnorm          
-COPY --from=r-build-env /usr/local/lib/R/site-library/openssl/ /usr/local/lib/R/site-library/openssl          
-# COPY --from=r-build-env /usr/local/lib/R/site-library/pillar/ /usr/local/lib/R/site-library/pillar            
-COPY --from=r-build-env /usr/local/lib/R/site-library/pkgconfig/ /usr/local/lib/R/site-library/pkgconfig      
-COPY --from=r-build-env /usr/local/lib/R/site-library/plogr/ /usr/local/lib/R/site-library/plogr              
-COPY --from=r-build-env /usr/local/lib/R/site-library/plotly/ /usr/local/lib/R/site-library/plotly            
-COPY --from=r-build-env /usr/local/lib/R/site-library/plyr/ /usr/local/lib/R/site-library/plyr                
-COPY --from=r-build-env /usr/local/lib/R/site-library/prabclus/ /usr/local/lib/R/site-library/prabclus        
-COPY --from=r-build-env /usr/local/lib/R/site-library/processx/ /usr/local/lib/R/site-library/processx        
-COPY --from=r-build-env /usr/local/lib/R/site-library/purrr/ /usr/local/lib/R/site-library/purrr              
-COPY --from=r-build-env /usr/local/lib/R/site-library/qap/ /usr/local/lib/R/site-library/qap                  
-COPY --from=r-build-env /usr/local/lib/R/site-library/R6/ /usr/local/lib/R/site-library/R6                    
+COPY --from=r-build-env /usr/local/lib/R/site-library/assertthat/ /usr/local/lib/R/site-library/assertthat
+COPY --from=r-build-env /usr/local/lib/R/site-library/base64enc/ /usr/local/lib/R/site-library/base64enc
+COPY --from=r-build-env /usr/local/lib/R/site-library/BH/ /usr/local/lib/R/site-library/BH
+COPY --from=r-build-env /usr/local/lib/R/site-library/bindr/ /usr/local/lib/R/site-library/bindr
+COPY --from=r-build-env /usr/local/lib/R/site-library/bindrcpp/ /usr/local/lib/R/site-library/bindrcpp
+COPY --from=r-build-env /usr/local/lib/R/site-library/bitops/ /usr/local/lib/R/site-library/bitops
+COPY --from=r-build-env /usr/local/lib/R/site-library/caTools/ /usr/local/lib/R/site-library/caTools
+COPY --from=r-build-env /usr/local/lib/R/site-library/cli/ /usr/local/lib/R/site-library/cli
+COPY --from=r-build-env /usr/local/lib/R/site-library/colorspace/ /usr/local/lib/R/site-library/colorspace
+COPY --from=r-build-env /usr/local/lib/R/site-library/crayon/ /usr/local/lib/R/site-library/crayon
+COPY --from=r-build-env /usr/local/lib/R/site-library/crosstalk/ /usr/local/lib/R/site-library/crosstalk
+COPY --from=r-build-env /usr/local/lib/R/site-library/curl/ /usr/local/lib/R/site-library/curl
+COPY --from=r-build-env /usr/local/lib/R/site-library/data.table/ /usr/local/lib/R/site-library/data.table
+# COPY --from=r-build-env /usr/local/lib/R/site-library/debugme/ /usr/local/lib/R/site-library/debugme
+COPY --from=r-build-env /usr/local/lib/R/site-library/dendextend/ /usr/local/lib/R/site-library/dendextend
+COPY --from=r-build-env /usr/local/lib/R/site-library/DEoptimR/ /usr/local/lib/R/site-library/DEoptimR
+COPY --from=r-build-env /usr/local/lib/R/site-library/dichromat/ /usr/local/lib/R/site-library/dichromat
+COPY --from=r-build-env /usr/local/lib/R/site-library/digest/ /usr/local/lib/R/site-library/digest
+COPY --from=r-build-env /usr/local/lib/R/site-library/diptest/ /usr/local/lib/R/site-library/diptest
+COPY --from=r-build-env /usr/local/lib/R/site-library/dplyr/ /usr/local/lib/R/site-library/dplyr
+COPY --from=r-build-env /usr/local/lib/R/site-library/flexmix/ /usr/local/lib/R/site-library/flexmix
+COPY --from=r-build-env /usr/local/lib/R/site-library/foreach/ /usr/local/lib/R/site-library/foreach
+COPY --from=r-build-env /usr/local/lib/R/site-library/fpc/ /usr/local/lib/R/site-library/fpc
+COPY --from=r-build-env /usr/local/lib/R/site-library/gclus/ /usr/local/lib/R/site-library/gclus
+COPY --from=r-build-env /usr/local/lib/R/site-library/gdata/ /usr/local/lib/R/site-library/gdata
+COPY --from=r-build-env /usr/local/lib/R/site-library/gdtools/ /usr/local/lib/R/site-library/gdtools
+COPY --from=r-build-env /usr/local/lib/R/site-library/ggplot2/ /usr/local/lib/R/site-library/ggplot2
+COPY --from=r-build-env /usr/local/lib/R/site-library/glue/ /usr/local/lib/R/site-library/glue
+COPY --from=r-build-env /usr/local/lib/R/site-library/gplots/ /usr/local/lib/R/site-library/gplots
+COPY --from=r-build-env /usr/local/lib/R/site-library/gridExtra/ /usr/local/lib/R/site-library/gridExtra
+COPY --from=r-build-env /usr/local/lib/R/site-library/gtable/ /usr/local/lib/R/site-library/gtable
+COPY --from=r-build-env /usr/local/lib/R/site-library/gtools/ /usr/local/lib/R/site-library/gtools
+COPY --from=r-build-env /usr/local/lib/R/site-library/heatmaply/ /usr/local/lib/R/site-library/heatmaply
+COPY --from=r-build-env /usr/local/lib/R/site-library/hexbin/ /usr/local/lib/R/site-library/hexbin
+COPY --from=r-build-env /usr/local/lib/R/site-library/htmltools/ /usr/local/lib/R/site-library/htmltools
+COPY --from=r-build-env /usr/local/lib/R/site-library/htmlwidgets/ /usr/local/lib/R/site-library/htmlwidgets
+COPY --from=r-build-env /usr/local/lib/R/site-library/httpuv/ /usr/local/lib/R/site-library/httpuv
+COPY --from=r-build-env /usr/local/lib/R/site-library/httr/ /usr/local/lib/R/site-library/httr
+COPY --from=r-build-env /usr/local/lib/R/site-library/iterators/ /usr/local/lib/R/site-library/iterators
+COPY --from=r-build-env /usr/local/lib/R/site-library/jsonlite/ /usr/local/lib/R/site-library/jsonlite
+COPY --from=r-build-env /usr/local/lib/R/site-library/kernlab/ /usr/local/lib/R/site-library/kernlab
+COPY --from=r-build-env /usr/local/lib/R/site-library/labeling/ /usr/local/lib/R/site-library/labeling
+COPY --from=r-build-env /usr/local/lib/R/site-library/lazyeval/ /usr/local/lib/R/site-library/lazyeval
+COPY --from=r-build-env /usr/local/lib/R/site-library/magrittr/ /usr/local/lib/R/site-library/magrittr
+COPY --from=r-build-env /usr/local/lib/R/site-library/mclust/ /usr/local/lib/R/site-library/mclust
+COPY --from=r-build-env /usr/local/lib/R/site-library/mime/ /usr/local/lib/R/site-library/mime
+COPY --from=r-build-env /usr/local/lib/R/site-library/modeltools/ /usr/local/lib/R/site-library/modeltools
+COPY --from=r-build-env /usr/local/lib/R/site-library/munsell/ /usr/local/lib/R/site-library/munsell
+COPY --from=r-build-env /usr/local/lib/R/site-library/mvtnorm/ /usr/local/lib/R/site-library/mvtnorm
+COPY --from=r-build-env /usr/local/lib/R/site-library/openssl/ /usr/local/lib/R/site-library/openssl
+# COPY --from=r-build-env /usr/local/lib/R/site-library/pillar/ /usr/local/lib/R/site-library/pillar
+COPY --from=r-build-env /usr/local/lib/R/site-library/pkgconfig/ /usr/local/lib/R/site-library/pkgconfig
+COPY --from=r-build-env /usr/local/lib/R/site-library/plogr/ /usr/local/lib/R/site-library/plogr
+COPY --from=r-build-env /usr/local/lib/R/site-library/plotly/ /usr/local/lib/R/site-library/plotly
+COPY --from=r-build-env /usr/local/lib/R/site-library/plyr/ /usr/local/lib/R/site-library/plyr
+COPY --from=r-build-env /usr/local/lib/R/site-library/prabclus/ /usr/local/lib/R/site-library/prabclus
+COPY --from=r-build-env /usr/local/lib/R/site-library/processx/ /usr/local/lib/R/site-library/processx
+COPY --from=r-build-env /usr/local/lib/R/site-library/purrr/ /usr/local/lib/R/site-library/purrr
+COPY --from=r-build-env /usr/local/lib/R/site-library/qap/ /usr/local/lib/R/site-library/qap
+COPY --from=r-build-env /usr/local/lib/R/site-library/R6/ /usr/local/lib/R/site-library/R6
 COPY --from=r-build-env /usr/local/lib/R/site-library/RColorBrewer/ /usr/local/lib/R/site-library/RColorBrewer
-COPY --from=r-build-env /usr/local/lib/R/site-library/Rcpp/ /usr/local/lib/R/site-library/Rcpp                
-COPY --from=r-build-env /usr/local/lib/R/site-library/registry/ /usr/local/lib/R/site-library/registry        
-COPY --from=r-build-env /usr/local/lib/R/site-library/reshape2/ /usr/local/lib/R/site-library/reshape2        
-COPY --from=r-build-env /usr/local/lib/R/site-library/rlang/ /usr/local/lib/R/site-library/rlang              
-COPY --from=r-build-env /usr/local/lib/R/site-library/robustbase/ /usr/local/lib/R/site-library/robustbase    
-COPY --from=r-build-env /usr/local/lib/R/site-library/scales/ /usr/local/lib/R/site-library/scales            
-COPY --from=r-build-env /usr/local/lib/R/site-library/seriation/ /usr/local/lib/R/site-library/seriation      
-COPY --from=r-build-env /usr/local/lib/R/site-library/shiny/ /usr/local/lib/R/site-library/shiny              
-COPY --from=r-build-env /usr/local/lib/R/site-library/sourcetools/ /usr/local/lib/R/site-library/sourcetools  
-COPY --from=r-build-env /usr/local/lib/R/site-library/stringi/ /usr/local/lib/R/site-library/stringi          
-COPY --from=r-build-env /usr/local/lib/R/site-library/stringr/ /usr/local/lib/R/site-library/stringr          
-COPY --from=r-build-env /usr/local/lib/R/site-library/svglite/ /usr/local/lib/R/site-library/svglite          
-COPY --from=r-build-env /usr/local/lib/R/site-library/tibble/ /usr/local/lib/R/site-library/tibble            
-COPY --from=r-build-env /usr/local/lib/R/site-library/tidyr/ /usr/local/lib/R/site-library/tidyr              
-COPY --from=r-build-env /usr/local/lib/R/site-library/tidyselect/ /usr/local/lib/R/site-library/tidyselect    
-COPY --from=r-build-env /usr/local/lib/R/site-library/trimcluster/ /usr/local/lib/R/site-library/trimcluster  
-COPY --from=r-build-env /usr/local/lib/R/site-library/TSP/ /usr/local/lib/R/site-library/TSP                  
-# COPY --from=r-build-env /usr/local/lib/R/site-library/utf8/ /usr/local/lib/R/site-library/utf8                
-COPY --from=r-build-env /usr/local/lib/R/site-library/viridis/ /usr/local/lib/R/site-library/viridis          
-COPY --from=r-build-env /usr/local/lib/R/site-library/viridisLite/ /usr/local/lib/R/site-library/viridisLite  
-COPY --from=r-build-env /usr/local/lib/R/site-library/webshot/ /usr/local/lib/R/site-library/webshot          
-COPY --from=r-build-env /usr/local/lib/R/site-library/whisker/ /usr/local/lib/R/site-library/whisker          
-COPY --from=r-build-env /usr/local/lib/R/site-library/withr/ /usr/local/lib/R/site-library/withr              
-COPY --from=r-build-env /usr/local/lib/R/site-library/xtable/ /usr/local/lib/R/site-library/xtable            
+COPY --from=r-build-env /usr/local/lib/R/site-library/Rcpp/ /usr/local/lib/R/site-library/Rcpp
+COPY --from=r-build-env /usr/local/lib/R/site-library/registry/ /usr/local/lib/R/site-library/registry
+COPY --from=r-build-env /usr/local/lib/R/site-library/reshape2/ /usr/local/lib/R/site-library/reshape2
+COPY --from=r-build-env /usr/local/lib/R/site-library/rlang/ /usr/local/lib/R/site-library/rlang
+COPY --from=r-build-env /usr/local/lib/R/site-library/robustbase/ /usr/local/lib/R/site-library/robustbase
+COPY --from=r-build-env /usr/local/lib/R/site-library/scales/ /usr/local/lib/R/site-library/scales
+COPY --from=r-build-env /usr/local/lib/R/site-library/seriation/ /usr/local/lib/R/site-library/seriation
+COPY --from=r-build-env /usr/local/lib/R/site-library/shiny/ /usr/local/lib/R/site-library/shiny
+COPY --from=r-build-env /usr/local/lib/R/site-library/sourcetools/ /usr/local/lib/R/site-library/sourcetools
+COPY --from=r-build-env /usr/local/lib/R/site-library/stringi/ /usr/local/lib/R/site-library/stringi
+COPY --from=r-build-env /usr/local/lib/R/site-library/stringr/ /usr/local/lib/R/site-library/stringr
+COPY --from=r-build-env /usr/local/lib/R/site-library/svglite/ /usr/local/lib/R/site-library/svglite
+COPY --from=r-build-env /usr/local/lib/R/site-library/tibble/ /usr/local/lib/R/site-library/tibble
+COPY --from=r-build-env /usr/local/lib/R/site-library/tidyr/ /usr/local/lib/R/site-library/tidyr
+COPY --from=r-build-env /usr/local/lib/R/site-library/tidyselect/ /usr/local/lib/R/site-library/tidyselect
+COPY --from=r-build-env /usr/local/lib/R/site-library/trimcluster/ /usr/local/lib/R/site-library/trimcluster
+COPY --from=r-build-env /usr/local/lib/R/site-library/TSP/ /usr/local/lib/R/site-library/TSP
+# COPY --from=r-build-env /usr/local/lib/R/site-library/utf8/ /usr/local/lib/R/site-library/utf8
+COPY --from=r-build-env /usr/local/lib/R/site-library/viridis/ /usr/local/lib/R/site-library/viridis
+COPY --from=r-build-env /usr/local/lib/R/site-library/viridisLite/ /usr/local/lib/R/site-library/viridisLite
+COPY --from=r-build-env /usr/local/lib/R/site-library/webshot/ /usr/local/lib/R/site-library/webshot
+COPY --from=r-build-env /usr/local/lib/R/site-library/whisker/ /usr/local/lib/R/site-library/whisker
+COPY --from=r-build-env /usr/local/lib/R/site-library/withr/ /usr/local/lib/R/site-library/withr
+COPY --from=r-build-env /usr/local/lib/R/site-library/xtable/ /usr/local/lib/R/site-library/xtable
 COPY --from=r-build-env /usr/local/lib/R/site-library/yaml/ /usr/local/lib/R/site-library/yaml
+COPY --from=r-build-env /usr/local/lib/R/site-library/later/ /usr/local/lib/R/site-library/later
+COPY --from=r-build-env /usr/local/lib/R/site-library/promises/ /usr/local/lib/R/site-library/promises
 
 
 COPY main.R /src/