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ludoviccludovicc
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Add sample datasets from previous tests for R algos
1 parent a66e1a6 commit 5d0a184

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‎Dockerfile‎

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@@ -35,6 +35,8 @@ COPY --from=build-java-env /flyway/jars/data-db-setup.jar /flyway/jars/data-db-s
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COPY sql/V1_0__create.sql /flyway/sql/V1_0__create.sql
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COPY sql/V1_1__churn.sql /flyway/sql/V1_1__churn.sql
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COPY sql/V1_2__iris.sql /flyway/sql/V1_2__iris.sql
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COPY sql/V1_3__dummy_ldsm.sql /flyway/sql/V1_3__dummy_ldsm.sql
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COPY sql/V1_4__dummy_federation.sql /flyway/sql/V1_4__dummy_federation.sql
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ENV IMAGE=hbpmip/sample-data-db-setup:0.4.0 \
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DATASETS=linreg_sample,churn,iris

‎sql/V1_3__dummy_ldsm.sql‎

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@@ -0,0 +1,258 @@
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-- Collection of tables imported from the tests previously used in algorithm-repository
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-- Various datasets useful to test linear regression and other algorithms
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CREATE TABLE brain_feature
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(
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id character varying(32) NOT NULL,
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feature_name character varying(32) NOT NULL,
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tissue1_volume numeric NOT NULL,
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CONSTRAINT brain_feature_pkey PRIMARY KEY (id, feature_name)
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);
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INSERT INTO brain_feature VALUES ('10247', 'Hippocampus_L', 0.0083559);
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INSERT INTO brain_feature VALUES ('10247', 'Hippocampus_R', 0.0084571);
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INSERT INTO brain_feature VALUES ('10011', 'Hippocampus_L', 0.0090518);
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INSERT INTO brain_feature VALUES ('10011', 'Hippocampus_R', 0.0089223);
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INSERT INTO brain_feature VALUES ('10249', 'Hippocampus_L', 0.0084077);
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INSERT INTO brain_feature VALUES ('10249', 'Hippocampus_R', 0.0082491);
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INSERT INTO brain_feature VALUES ('10027', 'Hippocampus_L', 0.0077537);
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INSERT INTO brain_feature VALUES ('10027', 'Hippocampus_R', 0.0078314);
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INSERT INTO brain_feature VALUES ('10252', 'Hippocampus_L', 0.0090858);
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INSERT INTO brain_feature VALUES ('10252', 'Hippocampus_R', 0.0088347);
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INSERT INTO brain_feature VALUES ('10040', 'Hippocampus_L', 0.0090243);
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INSERT INTO brain_feature VALUES ('10040', 'Hippocampus_R', 0.0092456);
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INSERT INTO brain_feature VALUES ('10251', 'Hippocampus_L', 0.00931);
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INSERT INTO brain_feature VALUES ('10251', 'Hippocampus_R', 0.0095098);
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INSERT INTO brain_feature VALUES ('10043', 'Hippocampus_L', 0.0093191);
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INSERT INTO brain_feature VALUES ('10043', 'Hippocampus_R', 0.0087411);
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INSERT INTO brain_feature VALUES ('10253', 'Hippocampus_L', 0.01018);
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INSERT INTO brain_feature VALUES ('10253', 'Hippocampus_R', 0.010015);
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INSERT INTO brain_feature VALUES ('10044', 'Hippocampus_L', 0.0094314);
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INSERT INTO brain_feature VALUES ('10044', 'Hippocampus_R', 0.0094413);
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INSERT INTO brain_feature VALUES ('10254', 'Hippocampus_L', 0.0084853);
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INSERT INTO brain_feature VALUES ('10254', 'Hippocampus_R', 0.0089951);
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INSERT INTO brain_feature VALUES ('10048', 'Hippocampus_L', 0.0096006);
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INSERT INTO brain_feature VALUES ('10048', 'Hippocampus_R', 0.0098262);
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INSERT INTO brain_feature VALUES ('10284', 'Hippocampus_L', 0.0099415);
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INSERT INTO brain_feature VALUES ('10284', 'Hippocampus_R', 0.0097991);
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INSERT INTO brain_feature VALUES ('10049', 'Hippocampus_L', 0.0094648);
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INSERT INTO brain_feature VALUES ('10049', 'Hippocampus_R', 0.0094423);
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INSERT INTO brain_feature VALUES ('10285', 'Hippocampus_L', 0.011463);
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INSERT INTO brain_feature VALUES ('10285', 'Hippocampus_R', 0.011352);
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INSERT INTO brain_feature VALUES ('10053', 'Hippocampus_L', 0.010416);
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INSERT INTO brain_feature VALUES ('10053', 'Hippocampus_R', 0.0099714);
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INSERT INTO brain_feature VALUES ('10286', 'Hippocampus_L', 0.0099504);
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INSERT INTO brain_feature VALUES ('10286', 'Hippocampus_R', 0.0097052);
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INSERT INTO brain_feature VALUES ('10054', 'Hippocampus_L', 0.01063);
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INSERT INTO brain_feature VALUES ('10054', 'Hippocampus_R', 0.010287);
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INSERT INTO brain_feature VALUES ('10291', 'Hippocampus_L', 0.0097218);
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INSERT INTO brain_feature VALUES ('10291', 'Hippocampus_R', 0.0095365);
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INSERT INTO brain_feature VALUES ('10060', 'Hippocampus_L', 0.0085309);
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INSERT INTO brain_feature VALUES ('10060', 'Hippocampus_R', 0.0087288);
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INSERT INTO brain_feature VALUES ('10295', 'Hippocampus_L', 0.0086215);
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INSERT INTO brain_feature VALUES ('10295', 'Hippocampus_R', 0.0088408);
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INSERT INTO brain_feature VALUES ('10067', 'Hippocampus_L', 0.010377);
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INSERT INTO brain_feature VALUES ('10067', 'Hippocampus_R', 0.010362);
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INSERT INTO brain_feature VALUES ('10301', 'Hippocampus_L', 0.010393);
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INSERT INTO brain_feature VALUES ('10301', 'Hippocampus_R', 0.01047);
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INSERT INTO brain_feature VALUES ('10069', 'Hippocampus_L', 0.010018);
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INSERT INTO brain_feature VALUES ('10069', 'Hippocampus_R', 0.0099619);
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INSERT INTO brain_feature VALUES ('10302', 'Hippocampus_L', 0.0088861);
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INSERT INTO brain_feature VALUES ('10302', 'Hippocampus_R', 0.0090068);
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INSERT INTO brain_feature VALUES ('10075', 'Hippocampus_L', 0.0077614);
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INSERT INTO brain_feature VALUES ('10075', 'Hippocampus_R', 0.0078762);
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INSERT INTO brain_feature VALUES ('10303', 'Hippocampus_L', 0.0090281);
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INSERT INTO brain_feature VALUES ('10303', 'Hippocampus_R', 0.0093899);
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INSERT INTO brain_feature VALUES ('10076', 'Hippocampus_L', 0.0093545);
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INSERT INTO brain_feature VALUES ('10076', 'Hippocampus_R', 0.0090486);
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INSERT INTO brain_feature VALUES ('10304', 'Hippocampus_L', 0.010076);
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INSERT INTO brain_feature VALUES ('10304', 'Hippocampus_R', 0.010295);
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INSERT INTO brain_feature VALUES ('10079', 'Hippocampus_L', 0.010038);
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INSERT INTO brain_feature VALUES ('10079', 'Hippocampus_R', 0.01004);
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INSERT INTO brain_feature VALUES ('10305', 'Hippocampus_L', 0.0093198);
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INSERT INTO brain_feature VALUES ('10305', 'Hippocampus_R', 0.0092416);
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INSERT INTO brain_feature VALUES ('10082', 'Hippocampus_L', 0.0073469);
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INSERT INTO brain_feature VALUES ('10082', 'Hippocampus_R', 0.007683);
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INSERT INTO brain_feature VALUES ('10313', 'Hippocampus_L', 0.008028);
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INSERT INTO brain_feature VALUES ('10313', 'Hippocampus_R', 0.0083182);
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INSERT INTO brain_feature VALUES ('10101', 'Hippocampus_L', 0.0078333);
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INSERT INTO brain_feature VALUES ('10101', 'Hippocampus_R', 0.0075796);
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INSERT INTO brain_feature VALUES ('10323', 'Hippocampus_L', 0.0086435);
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INSERT INTO brain_feature VALUES ('10323', 'Hippocampus_R', 0.0087596);
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INSERT INTO brain_feature VALUES ('10103', 'Hippocampus_L', 0.01026);
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INSERT INTO brain_feature VALUES ('10103', 'Hippocampus_R', 0.0097726);
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INSERT INTO brain_feature VALUES ('10324', 'Hippocampus_L', 0.0094744);
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INSERT INTO brain_feature VALUES ('10324', 'Hippocampus_R', 0.0099447);
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INSERT INTO brain_feature VALUES ('10104', 'Hippocampus_L', 0.0093827);
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INSERT INTO brain_feature VALUES ('10104', 'Hippocampus_R', 0.0091295);
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INSERT INTO brain_feature VALUES ('10327', 'Hippocampus_L', 0.0093696);
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INSERT INTO brain_feature VALUES ('10327', 'Hippocampus_R', 0.0093498);
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INSERT INTO brain_feature VALUES ('10105', 'Hippocampus_L', 0.0085843);
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INSERT INTO brain_feature VALUES ('10105', 'Hippocampus_R', 0.0082892);
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INSERT INTO brain_feature VALUES ('10328', 'Hippocampus_L', 0.0068206);
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INSERT INTO brain_feature VALUES ('10328', 'Hippocampus_R', 0.0073848);
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INSERT INTO brain_feature VALUES ('10109', 'Hippocampus_L', 0.008455);
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INSERT INTO brain_feature VALUES ('10109', 'Hippocampus_R', 0.0080623);
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INSERT INTO brain_feature VALUES ('10329', 'Hippocampus_L', 0.0084326);
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INSERT INTO brain_feature VALUES ('10329', 'Hippocampus_R', 0.008415);
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INSERT INTO brain_feature VALUES ('10114', 'Hippocampus_L', 0.010067);
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INSERT INTO brain_feature VALUES ('10114', 'Hippocampus_R', 0.010079);
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INSERT INTO brain_feature VALUES ('10330', 'Hippocampus_L', 0.0089815);
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INSERT INTO brain_feature VALUES ('10330', 'Hippocampus_R', 0.008962);
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INSERT INTO brain_feature VALUES ('10123', 'Hippocampus_L', 0.0096616);
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INSERT INTO brain_feature VALUES ('10123', 'Hippocampus_R', 0.0095091);
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INSERT INTO brain_feature VALUES ('10331', 'Hippocampus_L', 0.0090053);
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INSERT INTO brain_feature VALUES ('10331', 'Hippocampus_R', 0.0093164);
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INSERT INTO brain_feature VALUES ('10129', 'Hippocampus_L', 0.0097288);
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INSERT INTO brain_feature VALUES ('10129', 'Hippocampus_R', 0.009705);
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INSERT INTO brain_feature VALUES ('10340', 'Hippocampus_L', 0.0095656);
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INSERT INTO brain_feature VALUES ('10340', 'Hippocampus_R', 0.0095769);
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INSERT INTO brain_feature VALUES ('10130', 'Hippocampus_L', 0.0080631);
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INSERT INTO brain_feature VALUES ('10130', 'Hippocampus_R', 0.0081479);
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CREATE TABLE func
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(
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id integer not null,
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efc numeric,
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fber numeric,
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fwhm numeric,
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gsr numeric,
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mean_fd numeric,
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perc_fd numeric,
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quality numeric,
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snr numeric,
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tsnr numeric,
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CONSTRAINT func_pkey PRIMARY KEY (id)
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);
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INSERT INTO func VALUES (0, 0.8928594712, 71.8147651699, 3.0674556069, 0.0018475233, 0.0408408753, 0.9652509653, 0.0321325127, 8.108289468, 30.5764438496);
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INSERT INTO func VALUES (1, 0.8895675821, 85.462335576, 3.1414412661, 0.0049201729, 0.0405618473, 0.9652509653, 0.0348567894, 8.7591282396, 27.9882928901);
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INSERT INTO func VALUES (2, 0.8919314276, 77.2858133545, 3.2081268066, 0.0161910031, 0.0504264928, 1.1583011583, 0.0347106407, 8.3488069531, 24.7341561057);
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INSERT INTO func VALUES (3, 0.8907167603, 81.2283485499, 3.121580772, 0.0095594906, 0.0453229441, 0.9652509653, 0.0337875569, 8.5797466393, 30.9229039509);
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INSERT INTO func VALUES (4, 0.891337653, 79.2063116383, 3.1182435749, 0.0089646386, 0.0470610241, 1.3513513514, 0.033757288, 8.4953509748, 28.4119761146);
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INSERT INTO func VALUES (5, 0.8917795683, 78.7616672884, 3.1266449685, 0.0070215935, 0.0419465369, 0.0, 0.0328954564, 8.4314581373, 31.5453449331);
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INSERT INTO func VALUES (6, 0.8908274796, 86.6774106539, 3.1036600237, 0.0088559458, 0.0506698078, 0.0, 0.0337602185, 8.7974784525, 32.3966801236);
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INSERT INTO func VALUES (7, 0.8915391946, 92.9039168623, 3.1829726837, 0.0129580279, 0.0552816015, 1.9305019305, 0.0374186375, 9.0835412892, 26.6196045643);
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INSERT INTO func VALUES (8, 0.8905397859, 85.9264823535, 3.1682139296, 0.007552428, 0.0445516078, 0.7722007722, 0.0352550624, 8.8437214684, 26.7596296754);
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INSERT INTO func VALUES (9, 0.8904955804, 89.3906006656, 3.2073217078, 0.0115060986, 0.0608126035, 2.1235521236, 0.0378801486, 8.9558462472, 22.9290395477);
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INSERT INTO func VALUES (10, 0.8903630965, 92.9805363337, 3.1965133608, 0.0117067194, 0.0539911782, 1.5444015444, 0.0367429058, 9.0876200588, 26.1731716045);
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INSERT INTO func VALUES (11, 0.8917948604, 89.3874303839, 3.1366732457, 0.0113939044, 0.0403788646, 0.9652509653, 0.0349010569, 8.935755697, 31.6739922726);
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INSERT INTO func VALUES (12, 0.8912340304, 94.7445522128, 3.1740373385, 0.0164791882, 0.0503244659, 0.9652509653, 0.0360130334, 9.2233596458, 27.3078136477);
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INSERT INTO func VALUES (13, 0.8928580713, 81.7350423336, 3.1459506536, 0.0019950569, 0.0443780063, 0.7722007722, 0.032630228, 8.6067464672, 27.4408456067);
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INSERT INTO func VALUES (14, 0.8935825128, 75.0972116377, 3.1453499581, 0.0061034884, 0.0500633936, 0.9652509653, 0.0302694346, 8.2887273453, 28.3722098881);
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INSERT INTO func VALUES (15, 0.8943765604, 78.6323910931, 3.1119571299, 0.0035185523, 0.0481957665, 1.5444015444, 0.031920067, 8.5022294015, 24.6997882694);
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INSERT INTO func VALUES (16, 0.8903564422, 101.212552133, 3.145525161, 0.008992377, 0.0482689788, 0.1930501931, 0.0339129234, 9.5341669546, 28.208872252);
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INSERT INTO func VALUES (17, 0.892350476, 79.745043763, 3.1157031336, 0.0071317779, 0.0431950384, 1.1583011583, 0.0307784888, 8.5196921336, 29.8925501029);
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INSERT INTO func VALUES (18, 0.8917267177, 92.5712216958, 3.109612749, 0.0114205022, 0.0444039715, 0.5791505792, 0.0322123759, 9.1166614745, 30.8891889965);
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INSERT INTO func VALUES (19, 0.8944770281, 83.7124251346, 3.1302533129, 0.0066770248, 0.0469555343, 0.7722007722, 0.0316503257, 8.774352613, 29.1498918599);
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INSERT INTO func VALUES (20, 0.8918963456, 90.9204005491, 3.1471103296, 0.0129209146, 0.0470918581, 0.1930501931, 0.0308352006, 9.0724968635, 32.7151268447);
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INSERT INTO func VALUES (21, 0.8938347597, 80.0999310163, 3.089660482, 0.0081540831, 0.0412430703, 0.0, 0.0301468421, 8.5766825499, 32.6904420748);
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INSERT INTO func VALUES (22, 0.8925691509, 101.2245709188, 3.1556452111, 0.0183881623, 0.0428958001, 0.0, 0.0315707923, 9.5585769011, 33.0750469891);
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INSERT INTO func VALUES (23, 0.8928557523, 79.0663356327, 3.0933522562, 0.0133374756, 0.0496976758, 0.5791505792, 0.0303756564, 8.5142990055, 32.3825435504);
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INSERT INTO func VALUES (24, 0.8910519488, 92.8940852681, 3.1279131034, 0.0252724575, 0.0469390414, 0.1930501931, 0.0326267469, 9.1215471494, 30.6367983832);
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INSERT INTO func VALUES (25, 0.8941314399, 80.3779829062, 3.1275001253, 0.0059893648, 0.0492017402, 1.7374517375, 0.0307553419, 8.5756565441, 31.4394721514);
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INSERT INTO func VALUES (26, 0.8927936597, 78.3491153308, 3.0819515567, 0.0079179924, 0.043174011, 0.3861003861, 0.0312214429, 8.4478230226, 31.033058214);
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INSERT INTO func VALUES (27, 0.8911440832, 94.1690424403, 3.1751094131, 0.0141351729, 0.051339883, 1.3513513514, 0.032180701, 9.2012090072, 29.8238809865);
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INSERT INTO func VALUES (28, 0.8924738131, 90.2684708939, 3.1428387173, 0.0142310822, 0.0395547725, 0.1930501931, 0.0313128203, 9.0542785708, 30.734331294);
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INSERT INTO func VALUES (29, 0.8896378549, 98.0445528625, 3.1697615547, 0.0110205782, 0.0620901351, 4.0540540541, 0.0325582031, 9.3689756785, 30.5028634122);
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INSERT INTO func VALUES (30, 0.8921301759, 81.9758881967, 3.1206046418, 0.0081403929, 0.0404924253, 0.1930501931, 0.0302667952, 8.6277607351, 34.1287737109);
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--- muscle dataset from R MASS package
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CREATE TABLE muscle
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(
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id integer NOT NULL,
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strip character varying(32) NOT NULL,
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conc numeric,
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length numeric,
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CONSTRAINT muscle_pkey PRIMARY KEY (id)
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);
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INSERT INTO muscle VALUES (3, 'S01', 1, 15.8);
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INSERT INTO muscle VALUES (4, 'S01', 2, 20.8);
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INSERT INTO muscle VALUES (5, 'S01', 3, 22.6);
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INSERT INTO muscle VALUES (6, 'S01', 4, 23.8);
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INSERT INTO muscle VALUES (9, 'S02', 1, 20.6);
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INSERT INTO muscle VALUES (10, 'S02', 2, 26.8);
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INSERT INTO muscle VALUES (11, 'S02', 3, 28.4);
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INSERT INTO muscle VALUES (12, 'S02', 4, 27);
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INSERT INTO muscle VALUES (13, 'S03', 0.25, 7.2);
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INSERT INTO muscle VALUES (14, 'S03', 0.5, 15.4);
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INSERT INTO muscle VALUES (15, 'S03', 1, 22.8);
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INSERT INTO muscle VALUES (16, 'S03', 2, 27.4);
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INSERT INTO muscle VALUES (19, 'S04', 0.25, 2.2);
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INSERT INTO muscle VALUES (20, 'S04', 0.5, 9);
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INSERT INTO muscle VALUES (21, 'S04', 1, 16.6);
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INSERT INTO muscle VALUES (25, 'S05', 0.25, 2);
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INSERT INTO muscle VALUES (26, 'S05', 0.5, 6);
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INSERT INTO muscle VALUES (27, 'S05', 1, 15.2);
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INSERT INTO muscle VALUES (31, 'S06', 0.25, 5);
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INSERT INTO muscle VALUES (32, 'S06', 0.5, 9.2);
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INSERT INTO muscle VALUES (33, 'S06', 1, 14.2);
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INSERT INTO muscle VALUES (39, 'S07', 1, 28);
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INSERT INTO muscle VALUES (40, 'S07', 2, 32);
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INSERT INTO muscle VALUES (43, 'S08', 0.25, 5.6);
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INSERT INTO muscle VALUES (45, 'S08', 1, 26);
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INSERT INTO muscle VALUES (50, 'S09', 0.5, 15.4);
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INSERT INTO muscle VALUES (51, 'S09', 1, 23.2);
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INSERT INTO muscle VALUES (55, 'S10', 0.25, 11.8);
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INSERT INTO muscle VALUES (57, 'S10', 1, 29);
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INSERT INTO muscle VALUES (61, 'S11', 0.25, 11);
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INSERT INTO muscle VALUES (62, 'S11', 0.5, 18.8);
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INSERT INTO muscle VALUES (63, 'S11', 1, 26.2);
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INSERT INTO muscle VALUES (69, 'S12', 1, 26);
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INSERT INTO muscle VALUES (70, 'S12', 2, 33.8);
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INSERT INTO muscle VALUES (75, 'S13', 1, 24.2);
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INSERT INTO muscle VALUES (76, 'S13', 2, 28.8);
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INSERT INTO muscle VALUES (80, 'S14', 0.5, 15);
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INSERT INTO muscle VALUES (81, 'S14', 1, 24);
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INSERT INTO muscle VALUES (86, 'S15', 0.5, 20.8);
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INSERT INTO muscle VALUES (87, 'S15', 1, 29);
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INSERT INTO muscle VALUES (93, 'S16', 1, 18.2);
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INSERT INTO muscle VALUES (94, 'S16', 2, 25.8);
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INSERT INTO muscle VALUES (95, 'S16', 3, 30);
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INSERT INTO muscle VALUES (96, 'S16', 4, 32.2);
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INSERT INTO muscle VALUES (99, 'S17', 1, 21.5);
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INSERT INTO muscle VALUES (100, 'S17', 2, 28.4);
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INSERT INTO muscle VALUES (101, 'S17', 3, 32);
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INSERT INTO muscle VALUES (102, 'S17', 4, 29.6);
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INSERT INTO muscle VALUES (105, 'S18', 1, 15.4);
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INSERT INTO muscle VALUES (106, 'S18', 2, 19);
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INSERT INTO muscle VALUES (107, 'S18', 3, 19.4);
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INSERT INTO muscle VALUES (111, 'S19', 1, 29);
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INSERT INTO muscle VALUES (112, 'S19', 2, 34);
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INSERT INTO muscle VALUES (113, 'S19', 3, 37);
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INSERT INTO muscle VALUES (117, 'S20', 1, 22.2);
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INSERT INTO muscle VALUES (118, 'S20', 2, 29);
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INSERT INTO muscle VALUES (119, 'S20', 3, 32.2);
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INSERT INTO muscle VALUES (123, 'S21', 1, 23);
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INSERT INTO muscle VALUES (124, 'S21', 2, 27.4);
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INSERT INTO muscle VALUES (125, 'S21', 3, 30.4);
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--- ADNI inspired dataset
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CREATE TABLE brain
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(
238+
id integer NOT NULL,
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prov character varying(32) NOT NULL,
240+
age numeric,
241+
left_amygdala numeric,
242+
left_splsupparlob numeric,
243+
right_poparoper numeric,
244+
right_pogpostcgyr numeric,
245+
246+
CONSTRAINT brain_pkey PRIMARY KEY (id)
247+
248+
);
249+
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INSERT INTO brain VALUES(1, 'AD1', 81.2, 0.764, 0.521, 0.943, 1.123);
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INSERT INTO brain VALUES(2, 'AD1', 81.2, 0.763, 0.493, 0.856, 1.112);
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INSERT INTO brain VALUES(3, 'AD1', 81.2, 0.763, 0.542, 0.894, 1.167);
253+
INSERT INTO brain VALUES(4, 'AD1', 73.6, 0.721, 0.535, 0.952, 1.201);
254+
INSERT INTO brain VALUES(5, 'AD1', 73.6, 0.715, 0.512, 0.901, 1.097);
255+
INSERT INTO brain VALUES(6, 'AD1', 73.6, 0.727, 0.489, 0.878, 1.115);
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INSERT INTO brain VALUES(7, 'AD1', 73.6, 0.727, 0.563, 0.987, 1.098);
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INSERT INTO brain VALUES(8, 'AD2', 70.1, 0.916, 0.535, 0.956, 1.129);
258+
INSERT INTO brain VALUES(9, 'AD2', 70.1, 0.865, 0.515, 0.921, 1.114);

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