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ludoviccludovicc
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Add mixed dataset built from synth data
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‎Dockerfile‎

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@@ -41,10 +41,11 @@ COPY sql/V1_0__create.sql \
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sql/V1_3__dummy_ldsm.sql \
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sql/V1_4__dummy_federation.sql \
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sql/V1_5__synthetic_datasets.sql \
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sql/V1_6__mixed_datasets.sql \
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/flyway/sql/
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ENV IMAGE=hbpmip/sample-data-db-setup:0.5.1 \
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DATASETS=linreg_sample,churn,iris,desd_synth,nida_synth,qqni_synth
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DATASETS=linreg_sample,churn,iris,desd_synth,nida_synth,qqni_synth,desd_mixed,nida_mixed,qqni_mixed
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LABEL org.label-schema.build-date=$BUILD_DATE \
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org.label-schema.name="hbpmip/sample-data-db-setup" \

‎sql/V1_6__mixed_datasets.sql‎

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-- Copied from mip-cde-data-db-setup 1.0.4
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-- Three tables, using the CDE variables and representing 3 different datasets that could be in difference locations.
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SET datestyle to 'European';
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CREATE TABLE cde_features_mixed
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(
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"subjectcode" char(20),
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"_3rdventricle" numeric,
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"_4thventricle" numeric,
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"adnicategory" varchar(256),
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"agegroup" varchar(256),
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"alzheimerbroadcategory" varchar(256),
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"apoe4" int,
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"av45" numeric,
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"brainstem" numeric,
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"cerebellarvermallobulesiv" numeric,
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"cerebellarvermallobulesviiix" numeric,
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"cerebellarvermallobulesvivii" numeric,
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"csfglobal" numeric,
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"dataset" varchar(256),
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"edsdcategory" varchar(256),
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"fdg" numeric,
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"gender" char(1),
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"handedness" char(1),
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"leftaccumbensarea" numeric,
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"leftacgganteriorcingulategyrus" numeric,
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"leftainsanteriorinsula" numeric,
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"leftamygdala" numeric,
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"leftangangulargyrus" numeric,
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"leftaorganteriororbitalgyrus" numeric,
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"leftbasalforebrain" numeric,
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"leftcalccalcarinecortex" numeric,
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"leftcaudate" numeric,
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"leftcerebellumexterior" numeric,
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"leftcerebellumwhitematter" numeric,
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"leftcerebralwhitematter" numeric,
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"leftcocentraloperculum" numeric,
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"leftcuncuneus" numeric,
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"leftententorhinalarea" numeric,
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"leftfofrontaloperculum" numeric,
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"leftfrpfrontalpole" numeric,
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"leftfugfusiformgyrus" numeric,
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"leftgregyrusrectus" numeric,
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"lefthippocampus" numeric,
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"leftinflatvent" numeric,
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"leftioginferioroccipitalgyrus" numeric,
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"leftitginferiortemporalgyrus" numeric,
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"leftlateralventricle" numeric,
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"leftliglingualgyrus" numeric,
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"leftlorglateralorbitalgyrus" numeric,
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"leftmcggmiddlecingulategyrus" numeric,
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"leftmfcmedialfrontalcortex" numeric,
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"leftmfgmiddlefrontalgyrus" numeric,
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"leftmogmiddleoccipitalgyrus" numeric,
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"leftmorgmedialorbitalgyrus" numeric,
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"leftmpogpostcentralgyrusmedialsegment" numeric,
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"leftmprgprecentralgyrusmedialsegment" numeric,
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"leftmsfgsuperiorfrontalgyrusmedialsegment" numeric,
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"leftmtgmiddletemporalgyrus" numeric,
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"leftocpoccipitalpole" numeric,
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"leftofugoccipitalfusiformgyrus" numeric,
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"leftopifgopercularpartoftheinferiorfrontalgyrus" numeric,
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"leftorifgorbitalpartoftheinferiorfrontalgyrus" numeric,
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"leftpallidum" numeric,
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"leftpcggposteriorcingulategyrus" numeric,
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"leftpcuprecuneus" numeric,
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"leftphgparahippocampalgyrus" numeric,
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"leftpinsposteriorinsula" numeric,
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"leftpogpostcentralgyrus" numeric,
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"leftpoparietaloperculum" numeric,
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"leftporgposteriororbitalgyrus" numeric,
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"leftppplanumpolare" numeric,
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"leftprgprecentralgyrus" numeric,
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"leftptplanumtemporale" numeric,
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"leftputamen" numeric,
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"leftscasubcallosalarea" numeric,
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"leftsfgsuperiorfrontalgyrus" numeric,
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"leftsmcsupplementarymotorcortex" numeric,
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"leftsmgsupramarginalgyrus" numeric,
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"leftsogsuperioroccipitalgyrus" numeric,
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"leftsplsuperiorparietallobule" numeric,
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"leftstgsuperiortemporalgyrus" numeric,
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"leftthalamusproper" numeric,
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"lefttmptemporalpole" numeric,
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"lefttrifgtriangularpartoftheinferiorfrontalgyrus" numeric,
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"leftttgtransversetemporalgyrus" numeric,
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"leftventraldc" numeric,
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"minimentalstate" int,
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"montrealcognitiveassessment" int,
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"neurogenerativescategories" varchar(256),
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"opticchiasm" numeric,
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"parkinsonbroadcategory" varchar(256),
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"pib" numeric,
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"ppmicategory" varchar(256),
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"rightaccumbensarea" numeric,
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"rightacgganteriorcingulategyrus" numeric,
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"rightainsanteriorinsula" numeric,
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"rightamygdala" numeric,
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"rightangangulargyrus" numeric,
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"rightaorganteriororbitalgyrus" numeric,
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"rightbasalforebrain" numeric,
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"rightcalccalcarinecortex" numeric,
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"rightcaudate" numeric,
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"rightcerebellumexterior" numeric,
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"rightcerebellumwhitematter" numeric,
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"rightcerebralwhitematter" numeric,
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"rightcocentraloperculum" numeric,
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"rightcuncuneus" numeric,
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"rightententorhinalarea" numeric,
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"rightfofrontaloperculum" numeric,
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"rightfrpfrontalpole" numeric,
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"rightfugfusiformgyrus" numeric,
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"rightgregyrusrectus" numeric,
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"righthippocampus" numeric,
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"rightinflatvent" numeric,
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"rightioginferioroccipitalgyrus" numeric,
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"rightitginferiortemporalgyrus" numeric,
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"rightlateralventricle" numeric,
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"rightliglingualgyrus" numeric,
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"rightlorglateralorbitalgyrus" numeric,
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"rightmcggmiddlecingulategyrus" numeric,
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"rightmfcmedialfrontalcortex" numeric,
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"rightmfgmiddlefrontalgyrus" numeric,
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"rightmogmiddleoccipitalgyrus" numeric,
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"rightmorgmedialorbitalgyrus" numeric,
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"rightmpogpostcentralgyrusmedialsegment" numeric,
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"rightmprgprecentralgyrusmedialsegment" numeric,
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"rightmsfgsuperiorfrontalgyrusmedialsegment" numeric,
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"rightmtgmiddletemporalgyrus" numeric,
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"rightocpoccipitalpole" numeric,
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"rightofugoccipitalfusiformgyrus" numeric,
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"rightopifgopercularpartoftheinferiorfrontalgyrus" numeric,
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"rightorifgorbitalpartoftheinferiorfrontalgyrus" numeric,
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"rightpallidum" numeric,
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"rightpcggposteriorcingulategyrus" numeric,
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"rightpcuprecuneus" numeric,
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"rightphgparahippocampalgyrus" numeric,
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"rightpinsposteriorinsula" numeric,
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"rightpogpostcentralgyrus" numeric,
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"rightpoparietaloperculum" numeric,
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"rightporgposteriororbitalgyrus" numeric,
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"rightppplanumpolare" numeric,
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"rightprgprecentralgyrus" numeric,
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"rightptplanumtemporale" numeric,
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"rightputamen" numeric,
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"rightscasubcallosalarea" numeric,
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"rightsfgsuperiorfrontalgyrus" numeric,
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"rightsmcsupplementarymotorcortex" numeric,
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"rightsmgsupramarginalgyrus" numeric,
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"rightsogsuperioroccipitalgyrus" numeric,
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"rightsplsuperiorparietallobule" numeric,
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"rightstgsuperiortemporalgyrus" numeric,
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"rightthalamusproper" numeric,
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"righttmptemporalpole" numeric,
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"righttrifgtriangularpartoftheinferiorfrontalgyrus" numeric,
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"rightttgtransversetemporalgyrus" numeric,
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"rightventraldc" numeric,
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"rs10498633_t" int,
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"rs11136000_t" int,
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"rs11767557_c" int,
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"rs1476679_c" int,
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"rs17125944_c" int,
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"rs190982_g" int,
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"rs2718058_g" int,
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"rs3764650_g" int,
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"rs3818361_t" int,
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"rs3851179_a" int,
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"rs3865444_t" int,
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"rs610932_a" int,
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"rs744373_c" int,
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"subjectage" numeric,
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"subjectageyears" int,
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"tiv" numeric,
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"updrshy" int,
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"updrstotal" int,
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CONSTRAINT pk_cde_features_mixed PRIMARY KEY (subjectcode)
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)
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WITH (
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OIDS=FALSE
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);

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