markdown source builds

actions-user · actions-user · commit b1c7d4d0e483 · 2026-05-19T23:24:03.000Z
Auto-generated via `{sandpaper}` Source : 3de9109 Branch : main Author : davecash75 <d.cash@ucl.ac.uk> Time : 2026-05-19 23:22:57 +0000 Message : Merge pull request #6 from HealthBioscienceIDEAS/5-update-with-location-information-for-2026 5 update with location information for 2026
diff --git a/index.md b/index.md
@@ -4,9 +4,9 @@ site: sandpaper::sandpaper_site
 
 |  |  |
 | --- | --- |
-| Date | Friday 25th July 2025 |
-| Time | 1:00 - 5:00 PM Eastern Daylight Time | 
-| Location | Westin Harbour Castle, Pier 7&8 - Toronto, Canada |
+| Date | Friday 10th July 2026 |
+| Time | 8:00AM - 12:00PM British Summer Time | 
+| Location | Aurora Ballroom 2, 3, 5, 6 — InterContinental-The O2 — London, United Kingdom |
 | Format | In-person workshop | 
 
 The workshop will provide practical information and an enhanced understanding
@@ -82,15 +82,15 @@ modalities used in dementia research.
 
 | Time | Topic | Leader(s) | 
 | --- | --- | --- |
-| 1:00-1:10 PM | Opening Remarks | David Cash and Tobey Betthauser |
-| 1:10-1:40 PM |  Image data: Basic Structure and Function | Ludovica Griffanti | 
-| 1:40-2:10 PM | Structural MRI | David Cash | 
-| 2:10-2:20 PM | Break | |
-| 2:20-2:50 PM | Introduction to Advanced Imaging Analysis Sections (PET, dMRI,fMRI) | Tobey Betthauser, Alexa Pichet Binette, Luigi Lorenzini |
-| 2:50-3:40 PM | Independent working session 1: Diffsion MRI, functional MRI, PET | Facilitated by all organizers |
-| 3:40-3:50 PM | Break | |
-| 3:50-4:40 PM | Independent working session 2: Diffsion MRI, functional MRI, PET   | Facilitated by all organizers |
-| 4:40-5:00 PM | Wrapup, Q&A, feedback | David Cash and Tobey Betthauser |
+| 8:00-8:10 AM | Opening Remarks | David Cash and Tobey Betthauser |
+| 8:10-8:40 AM |  Image data: Basic Structure and Function | Ludovica Griffanti | 
+| 8:40-9:10 AM | Structural MRI | David Cash | 
+| 9:10-9:20 AM | Break | |
+| 9:20-9:50 AM | Introduction to Advanced Imaging Analysis Sections (PET, dMRI,fMRI) | Tobey Betthauser, Alexa Pichet Binette, Luigi Lorenzini |
+| 9:50-10:40 AM | Independent working session 1: Diffsion MRI, functional MRI, PET | Facilitated by all organizers |
+| 10:40-10:50 AM | Break | |
+| 10:50-11:40 AM | Independent working session 2: Diffsion MRI, functional MRI, PET   | Facilitated by all organizers |
+| 11:40AM - 12:00 PM | Wrapup, Q&A, feedback | David Cash and Tobey Betthauser |
 
 
 
diff --git a/md5sum.txt b/md5sum.txt
@@ -2,7 +2,7 @@
 "CODE_OF_CONDUCT.md" "c93c83c630db2fe2462240bf72552548" "site/built/CODE_OF_CONDUCT.md" "2026-05-19"
 "LICENSE.md" "311aa8c5f5997c058400c972041cd16b" "site/built/LICENSE.md" "2026-05-19"
 "config.yaml" "f0eb04fb89074b2b555f12f71ea67647" "site/built/config.yaml" "2026-05-19"
-"index.md" "4a9e9248fac405fe205af24799586a18" "site/built/index.md" "2026-05-19"
+"index.md" "b80fc26374dba387f92e884a0bac69e7" "site/built/index.md" "2026-05-19"
 "links.md" "8184cf4149eafbf03ce8da8ff0778c14" "site/built/links.md" "2026-05-19"
 "episodes/imaging-data-structure-and-formats.Rmd" "ddc5895fc1246678e292e6440bf547de" "site/built/imaging-data-structure-and-formats.md" "2026-05-19"
 "episodes/structural-mri.Rmd" "c3e33d9fde6503262ee2b2b148829f10" "site/built/structural-mri.md" "2026-05-19"
@@ -11,6 +11,7 @@
 "episodes/functional-mri.Rmd" "4029e7fb129d56c8e5932384f445551b" "site/built/functional-mri.md" "2026-05-19"
 "episodes/command-line.Rmd" "91356ccdd0f4c127d4aee6f3f0ea68b4" "site/built/command-line.md" "2026-05-19"
 "instructors/instructor-notes.md" "5cf113fd22defb29d17b64597f3c9bc0" "site/built/instructor-notes.md" "2026-05-19"
-"learners/setup.md" "7080db6a1bfd1dc7e4d5c501465d1cff" "site/built/setup.md" "2026-05-19"
-"learners/virtual-machine.md" "d65e41f3261ac1e2003b28c9f1897ca9" "site/built/virtual-machine.md" "2026-05-19"
+"learners/setup.md" "ab151405b36ee392959fbdbd4b8f5ed9" "site/built/setup.md" "2026-05-19"
+"learners/virtual-machine.md" "ebc8b7dc6155c5db928b2acefaa6066f" "site/built/virtual-machine.md" "2026-05-19"
 "profiles/learner-profiles.md" "5fe5bf7537072422b91ed393ada03f9a" "site/built/learner-profiles.md" "2026-05-19"
+"renv/profiles/lesson-requirements/renv.lock" "41fbfe77059edd084140fa358b499415" "site/built/renv.lock" "2026-05-19"
diff --git a/setup.md b/setup.md
@@ -8,17 +8,18 @@ The following committee members have been developing and testing the content and
 | Name | Organization |
 | --- | --- |
 | David Cash | UCL Queen Square Institute of Neurology, United Kingdom |
-| Luigi Lorenzini | Amsterdam UMC, Netherlands |
+| Luigi Lorenzini | University of Genoa, Italy |
 | Ludovica Griffanti | University of Oxford, United Kingdom |
 | Tobey Betthauser | University of Wisconsin, U.S.A. | 
-| Alexa Pichet Binette | Lund University, Sweden |
+| Alexa Pichet Binette | Université de Montréal, Canada |
 
 ### Acknowledgements
 These lessons are developed as part of the [Health and Biosciences IDEAS](https://healthbioscienceideas.github.io) project, which is a training initiative funded by [UKRI Innovation Scholars](https://www.ukri.org/opportunity/innovation-scholars-data-science-training-in-health-bioscience/) (MR/V03863X/1)
 
 Thanks to the generous support of the Alzheimer's Association, the [International Society to Advance Alzheimer's Research and Treatment (ISTAART)](https://action.alz.org/personifyebusiness/default.aspx?tabid=1516) and the ISTAART Neuroimaging Professional Interest Area in terms of travel funding for the organizers.
 
 Data for this course comes from:
+
 * [Open Access Series of Imaging Studies](https://www.oasis-brains.org/)(OASIS) dataset. Many thanks to Pamela LaMontaigne and the OASIS team as Washington University for their support with the data.
 * [Wisconsin Registry for Alzheimer's Prevention](https://wrap.wisc.edu/). Many thanks to the WRAP study teams and participants at the University of Wisconsin-Madison for their contributions.
 * Chris Rorden's [dcm_validate data set](https://github.com/neurolabusc/dcm_validate). More information on this validation data set can be found in the [accompanying paper](https://www.nature.com/articles/s41597-025-05503-w).
diff --git a/virtual-machine.md b/virtual-machine.md
@@ -8,7 +8,7 @@ This page will tell you how to access your personal virtual (VM) to run these
 lessons. The virtual machine is essentially a "computer within a computer". 
 For this workshop, we have created virtual machines that have all the 
 necessary software to perform the lessons. Here are the requirements for AWS 
-AppStream2.0 from the manufacturer’s website: Users can access AppStream 2.0 
+WorkSpaces from the manufacturer’s website: Users can access WorkSpaces 
 through an HTML5-capable web browser on a desktop computer such as a Windows, 
 Mac, Chromebook, or Linux computer. HTML5-capable web browsers that can be 
 used include the following: Google Chrome, Safari, Microsoft Edge. 
@@ -67,7 +67,7 @@ This is now on the virtual machine's clipboard. You can past this in by
 right-clicking in a terminal window and selecting paste.
 ![](fig/appstream_terminal_righclick.png){alt="Right click mouse in terminal"}
 
-And voila! You shoudl see the paste in the virtual machine.
+And voila! You should see the paste in the virtual machine.
 ![](fig/appstream_terminal_pasted.png){alt="Text pasted into terminal"}
 
 :::::::::::::::::::::::::
