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Modified dcm2niix exercise#2

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davecash75 merged 2 commits into
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1-add-dcm2niix-example
Jul 22, 2025
Merged

Modified dcm2niix exercise#2
davecash75 merged 2 commits into
mainfrom
1-add-dcm2niix-example

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@davecash75

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Have updated to match the VM. Also, I'm going to add a few screenshots about the clipboard.

@davecash75 davecash75 linked an issue Jul 21, 2025 that may be closed by this pull request
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github-actions Bot commented Jul 21, 2025

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Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

  • 🎯 correct output
  • 🖼️ correct figures
  • ❓ new warnings
  • ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/HealthBioscienceIDEAS/aaic-neuroimaging-workshop/compare/md-outputs..md-outputs-PR-2

The following changes were observed in the rendered markdown documents:

 fig/appstream_clipboard_dialog.png (new)       | Bin 0 -> 1057796 bytes
 fig/appstream_clipboard_dialog_paste.png (new) | Bin 0 -> 1072143 bytes
 fig/appstream_clipboard_menu.png (new)         | Bin 0 -> 1626069 bytes
 fig/appstream_terminal_pasted.png (new)        | Bin 0 -> 1602428 bytes
 fig/appstream_terminal_righclick.png (new)     | Bin 0 -> 1633261 bytes
 imaging-data-structure-and-formats.md          | 376 +++++++++++++++++++++----
 index.md                                       |   7 +
 md5sum.txt                                     |  32 +--
 reference.md (gone)                            |   7 -
 setup.md                                       |  42 +--
 virtual-machine.md (new)                       |  73 +++++
 11 files changed, 419 insertions(+), 118 deletions(-)
What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2025-07-21 10:42:38 +0000

github-actions Bot pushed a commit that referenced this pull request Jul 21, 2025
github-actions Bot pushed a commit that referenced this pull request Jul 21, 2025
@davecash75
davecash75 merged commit f6a93b1 into main Jul 22, 2025
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@davecash75
davecash75 deleted the 1-add-dcm2niix-example branch July 22, 2025 08:00
github-actions Bot pushed a commit that referenced this pull request Jul 22, 2025
Auto-generated via `{sandpaper}`
Source  : f6a93b1
Branch  : main
Author  : davecash75 <d.cash@ucl.ac.uk>
Time    : 2025-07-22 08:00:06 +0000
Message : Merge pull request #2 from HealthBioscienceIDEAS/1-add-dcm2niix-example

Modified dcm2niix exercise
github-actions Bot pushed a commit that referenced this pull request Jul 22, 2025
Auto-generated via `{sandpaper}`
Source  : 395cb14
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-07-22 08:02:11 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : f6a93b1
Branch  : main
Author  : davecash75 <d.cash@ucl.ac.uk>
Time    : 2025-07-22 08:00:06 +0000
Message : Merge pull request #2 from HealthBioscienceIDEAS/1-add-dcm2niix-example

Modified dcm2niix exercise
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Add dcm2niix example

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