diff --git a/.gitignore b/.gitignore index 9cad142..9d82429 100644 --- a/.gitignore +++ b/.gitignore @@ -51,3 +51,4 @@ po/*~ # renv sandbox needed for renv version 0.16.0 renv/sandbox # OPTIONAL +.positai diff --git a/index.md b/index.md index 1204265..c92b114 100644 --- a/index.md +++ b/index.md @@ -4,9 +4,9 @@ site: sandpaper::sandpaper_site | | | | --- | --- | -| Date | Friday 25th July 2025 | -| Time | 1:00 - 5:00 PM Eastern Daylight Time | -| Location | Westin Harbour Castle, Pier 7&8 - Toronto, Canada | +| Date | Friday 10th July 2026 | +| Time | 8:00AM - 12:00PM British Summer Time | +| Location | Aurora Ballroom 2, 3, 5, 6 — InterContinental-The O2 — London, United Kingdom | | Format | In-person workshop | The workshop will provide practical information and an enhanced understanding @@ -82,15 +82,15 @@ modalities used in dementia research. | Time | Topic | Leader(s) | | --- | --- | --- | -| 1:00-1:10 PM | Opening Remarks | David Cash and Tobey Betthauser | -| 1:10-1:40 PM | Image data: Basic Structure and Function | Ludovica Griffanti | -| 1:40-2:10 PM | Structural MRI | David Cash | -| 2:10-2:20 PM | Break | | -| 2:20-2:50 PM | Introduction to Advanced Imaging Analysis Sections (PET, dMRI,fMRI) | Tobey Betthauser, Alexa Pichet Binette, Luigi Lorenzini | -| 2:50-3:40 PM | Independent working session 1: Diffsion MRI, functional MRI, PET | Facilitated by all organizers | -| 3:40-3:50 PM | Break | | -| 3:50-4:40 PM | Independent working session 2: Diffsion MRI, functional MRI, PET | Facilitated by all organizers | -| 4:40-5:00 PM | Wrapup, Q&A, feedback | David Cash and Tobey Betthauser | +| 8:00-8:10 AM | Opening Remarks | David Cash and Tobey Betthauser | +| 8:10-8:40 AM | Image data: Basic Structure and Function | Ludovica Griffanti | +| 8:40-9:10 AM | Structural MRI | David Cash | +| 9:10-9:20 AM | Break | | +| 9:20-9:50 AM | Introduction to Advanced Imaging Analysis Sections (PET, dMRI,fMRI) | Tobey Betthauser, Alexa Pichet Binette, Luigi Lorenzini | +| 9:50-10:40 AM | Independent working session 1: Diffsion MRI, functional MRI, PET | Facilitated by all organizers | +| 10:40-10:50 AM | Break | | +| 10:50-11:40 AM | Independent working session 2: Diffsion MRI, functional MRI, PET | Facilitated by all organizers | +| 11:40AM - 12:00 PM | Wrapup, Q&A, feedback | David Cash and Tobey Betthauser | diff --git a/learners/setup.md b/learners/setup.md index 2998429..7335ebc 100644 --- a/learners/setup.md +++ b/learners/setup.md @@ -8,10 +8,10 @@ The following committee members have been developing and testing the content and | Name | Organization | | --- | --- | | David Cash | UCL Queen Square Institute of Neurology, United Kingdom | -| Luigi Lorenzini | Amsterdam UMC, Netherlands | +| Luigi Lorenzini | University of Genoa, Italy | | Ludovica Griffanti | University of Oxford, United Kingdom | | Tobey Betthauser | University of Wisconsin, U.S.A. | -| Alexa Pichet Binette | Lund University, Sweden | +| Alexa Pichet Binette | Université de Montréal, Canada | ### Acknowledgements These lessons are developed as part of the [Health and Biosciences IDEAS](https://healthbioscienceideas.github.io) project, which is a training initiative funded by [UKRI Innovation Scholars](https://www.ukri.org/opportunity/innovation-scholars-data-science-training-in-health-bioscience/) (MR/V03863X/1) @@ -19,6 +19,7 @@ These lessons are developed as part of the [Health and Biosciences IDEAS](https: Thanks to the generous support of the Alzheimer's Association, the [International Society to Advance Alzheimer's Research and Treatment (ISTAART)](https://action.alz.org/personifyebusiness/default.aspx?tabid=1516) and the ISTAART Neuroimaging Professional Interest Area in terms of travel funding for the organizers. Data for this course comes from: + * [Open Access Series of Imaging Studies](https://www.oasis-brains.org/)(OASIS) dataset. Many thanks to Pamela LaMontaigne and the OASIS team as Washington University for their support with the data. * [Wisconsin Registry for Alzheimer's Prevention](https://wrap.wisc.edu/). Many thanks to the WRAP study teams and participants at the University of Wisconsin-Madison for their contributions. * Chris Rorden's [dcm_validate data set](https://github.com/neurolabusc/dcm_validate). More information on this validation data set can be found in the [accompanying paper](https://www.nature.com/articles/s41597-025-05503-w). diff --git a/learners/virtual-machine.md b/learners/virtual-machine.md index 5c942b2..9a703d1 100644 --- a/learners/virtual-machine.md +++ b/learners/virtual-machine.md @@ -8,7 +8,7 @@ This page will tell you how to access your personal virtual (VM) to run these lessons. The virtual machine is essentially a "computer within a computer". For this workshop, we have created virtual machines that have all the necessary software to perform the lessons. Here are the requirements for AWS -AppStream2.0 from the manufacturer’s website: Users can access AppStream 2.0 +WorkSpaces from the manufacturer’s website: Users can access WorkSpaces through an HTML5-capable web browser on a desktop computer such as a Windows, Mac, Chromebook, or Linux computer. HTML5-capable web browsers that can be used include the following: Google Chrome, Safari, Microsoft Edge. @@ -67,7 +67,7 @@ This is now on the virtual machine's clipboard. You can past this in by right-clicking in a terminal window and selecting paste. ![](fig/appstream_terminal_righclick.png){alt="Right click mouse in terminal"} -And voila! You shoudl see the paste in the virtual machine. +And voila! You should see the paste in the virtual machine. ![](fig/appstream_terminal_pasted.png){alt="Text pasted into terminal"} :::::::::::::::::::::::::