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Added a callout to rename layers#122

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thompson318 merged 6 commits into
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st/sigma
Jun 8, 2026
Merged

Added a callout to rename layers#122
thompson318 merged 6 commits into
mainfrom
st/sigma

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@thompson318

@thompson318 thompson318 commented Jun 4, 2026

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Addresses #97

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github-actions Bot commented Jun 4, 2026

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❌ DANGER ❌

This pull request has modified workflows that created output. Close this now.

github-actions Bot pushed a commit that referenced this pull request Jun 4, 2026

@K-Meech K-Meech left a comment

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Thanks @thompson318 - looks great! This will make it a lot easier to type these sections in the console.

I've put a few minor suggestions below.

Comment thread episodes/filters-and-thresholding.md Outdated
Comment thread episodes/filters-and-thresholding.md Outdated
Comment thread episodes/filters-and-thresholding.md Outdated
Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026
@thompson318
thompson318 requested a review from K-Meech June 8, 2026 09:21

@K-Meech K-Meech left a comment

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Thanks @thompson318 - looks good! I like the extra text about keeping the nuclei_gaussian_sigma=3.0 layer or creating it again.

One minor suggestion below to make the 'Now let's try thresholding our image again.' line fit better with the next sentence.

Comment thread episodes/filters-and-thresholding.md Outdated
Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
@thompson318
thompson318 merged commit 82868a7 into main Jun 8, 2026
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@thompson318
thompson318 deleted the st/sigma branch June 8, 2026 13:51
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026
Auto-generated via `{sandpaper}`
Source  : 82868a7
Branch  : main
Author  : Stephen Thompson <s.thompson@ucl.ac.uk>
Time    : 2026-06-08 13:51:04 +0000
Message : Added a callout to rename layers (#122)

* Added a callout to rename layers

* Add image

* Update episodes/filters-and-thresholding.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Bigger figure

* tidy up renaming layers

* Update episodes/filters-and-thresholding.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

---------

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026
Auto-generated via `{sandpaper}`
Source  : e36381a
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2026-06-08 13:53:08 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 82868a7
Branch  : main
Author  : Stephen Thompson <s.thompson@ucl.ac.uk>
Time    : 2026-06-08 13:51:04 +0000
Message : Added a callout to rename layers (#122)

* Added a callout to rename layers

* Add image

* Update episodes/filters-and-thresholding.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Bigger figure

* tidy up renaming layers

* Update episodes/filters-and-thresholding.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

---------

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
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2 participants