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chore: ruff formatting
1 parent 1402016 commit 450c9e9

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main/como/proteomics_gen.py

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -34,7 +34,9 @@ async def load_gene_symbol_map(gene_symbols: list[str], entrez_map: Path | None
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else:
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biodbnet = BioDBNet()
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df = await biodbnet.async_db2db(
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values=gene_symbols, input_db=Input.GENE_SYMBOL, output_db=[Output.GENE_ID, Output.ENSEMBL_GENE_ID]
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values=gene_symbols,
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input_db=Input.GENE_SYMBOL,
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output_db=[Output.GENE_ID, Output.ENSEMBL_GENE_ID],
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)
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df.loc[df["gene_id"] == "-", ["gene_id"]] = np.nan
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df.to_csv(filepath, index_label="gene_symbol")

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