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chore: remove __main__ function
Signed-off-by: Josh Loecker <joshloecker@icloud.com>
1 parent 74ca5de commit 666fb84

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main/como/rnaseq_preprocess.py

Lines changed: 0 additions & 25 deletions
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@@ -849,28 +849,3 @@ async def rnaseq_preprocess(
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cache=cache,
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create_gene_info_only=create_gene_info_only,
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)
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async def _main():
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context_name = "notreatment"
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taxon = 9606
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como_context_dir = Path("/Users/joshl/Projects/COMO/main/data/COMO_input/naiveB")
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output_gene_info_filepath = Path("/Users/joshl/Projects/COMO/main/data/results/naiveB/gene_info_fixed.csv")
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output_trna_metadata_filepath = Path("/Users/joshl/Projects/COMO/main/data/config_sheets/trna_config.xlsx")
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output_trna_count_matrix_filepath = Path("/Users/joshl/Projects/COMO/main/data/results/naiveB/total-rna/totalrna_naiveB.csv")
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await rnaseq_preprocess(
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context_name=context_name,
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taxon=taxon,
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como_context_dir=como_context_dir,
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input_matrix_filepath=None,
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output_gene_info_filepath=output_gene_info_filepath,
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output_trna_metadata_filepath=output_trna_metadata_filepath,
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output_trna_count_matrix_filepath=output_trna_count_matrix_filepath,
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cache=False,
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log_level="INFO",
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)
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if __name__ == "__main__":
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asyncio.run(_main())

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