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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -849,28 +849,3 @@ async def rnaseq_preprocess(
849849 cache = cache ,
850850 create_gene_info_only = create_gene_info_only ,
851851 )
852-
853-
854- async def _main ():
855- context_name = "notreatment"
856- taxon = 9606
857- como_context_dir = Path ("/Users/joshl/Projects/COMO/main/data/COMO_input/naiveB" )
858- output_gene_info_filepath = Path ("/Users/joshl/Projects/COMO/main/data/results/naiveB/gene_info_fixed.csv" )
859- output_trna_metadata_filepath = Path ("/Users/joshl/Projects/COMO/main/data/config_sheets/trna_config.xlsx" )
860- output_trna_count_matrix_filepath = Path ("/Users/joshl/Projects/COMO/main/data/results/naiveB/total-rna/totalrna_naiveB.csv" )
861-
862- await rnaseq_preprocess (
863- context_name = context_name ,
864- taxon = taxon ,
865- como_context_dir = como_context_dir ,
866- input_matrix_filepath = None ,
867- output_gene_info_filepath = output_gene_info_filepath ,
868- output_trna_metadata_filepath = output_trna_metadata_filepath ,
869- output_trna_count_matrix_filepath = output_trna_count_matrix_filepath ,
870- cache = False ,
871- log_level = "INFO" ,
872- )
873-
874-
875- if __name__ == "__main__" :
876- asyncio .run (_main ())
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