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chore(ruff): reduce max line length
Signed-off-by: Josh Loecker <joshloecker@icloud.com>
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main/como/rnaseq_gen.py

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@@ -772,7 +772,9 @@ async def rnaseq_gen( # noqa: C901
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technique: FilteringTechnique | str = FilteringTechnique.ZFPKM,
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zfpkm_min_peak_height: float = 0.02,
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zfpkm_min_peak_distance: int = 1,
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umi_target_sum: int = 10_000,
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input_fragment_lengths: Path | None = None,
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umi_perform_normalization: bool = False,
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cutoff: int | float | None = None,
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force_zfpkm_plot: bool = False,
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log_level: LogLevel = LogLevel.INFO,

main/como/rnaseq_preprocess.py

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import numpy as np
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import numpy.typing as npt
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import pandas as pd
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import pandera.pandas as pa
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import pandera.typing.pandas as pat
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from fast_bioservices.biothings.mygene import MyGene
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from fast_bioservices.pipeline import gene_symbol_to_ensembl_and_gene_id
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from loguru import logger

ruff.toml

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line-length = 150
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line-length = 120
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extend-include = ["docs/**/*.py", "tests/**/*.py", "**/*.ipynb"]
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[format]

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