refactor: do not drop na values, keep as much data for as long as possible

JoshLoecker · JoshLoecker · commit 74ca5de85d56 · 2025-11-03T10:45:53.000-06:00
Signed-off-by: Josh Loecker &lt;joshloecker@icloud.com&gt;
diff --git a/main/como/rnaseq_preprocess.py b/main/como/rnaseq_preprocess.py
@@ -74,7 +74,6 @@ async def build_from_tab(cls, filepath: Path) -> _STARinformation:
                 "second_read_transcription_strand",
             ],
         )
-        df = df[~df["ensembl_gene_id"].isna()]
         return _STARinformation(
             num_unmapped=num_unmapped,
             num_multimapping=num_multimapping,

Original file line number	Diff line number	Diff line change
`@@ -74,7 +74,6 @@ async def build_from_tab(cls, filepath: Path) -> _STARinformation:`
`74`	`74`	`"second_read_transcription_strand",`
`75`	`75`	`],`
`76`	`76`	`)`
`77`		`- df = df[~df["ensembl_gene_id"].isna()]`
`78`	`77`	`return _STARinformation(`
`79`	`78`	`num_unmapped=num_unmapped,`
`80`	`79`	`num_multimapping=num_multimapping,`