fix: solver must be uppercase

JoshLoecker · JoshLoecker · commit ed35c2cc8591 · 2024-12-11T13:59:52.000-06:00
Signed-off-by: Josh Loecker &lt;joshloecker@icloud.com&gt;
diff --git a/main/como/create_context_specific_model.py b/main/como/create_context_specific_model.py
@@ -316,7 +316,7 @@ def _build_with_imat(
         exp_thresholds=expr_thesh,
         core=force_gene_ids,
         epsilon=0.01,
-        solver=solver,
+        solver=solver.upper(),
     )
     algorithm = IMAT(s_matrix, np.array(lb), np.array(ub), properties)
     context_rxns: npt.NDArray = algorithm.run()

Original file line number	Diff line number	Diff line change
`@@ -316,7 +316,7 @@ def _build_with_imat(`
`316`	`316`	`exp_thresholds=expr_thesh,`
`317`	`317`	`core=force_gene_ids,`
`318`	`318`	`epsilon=0.01,`
`319`		`- solver=solver,`
	`319`	`+ solver=solver.upper(),`
`320`	`320`	`)`
`321`	`321`	`algorithm = IMAT(s_matrix, np.array(lb), np.array(ub), properties)`
`322`	`322`	`context_rxns: npt.NDArray = algorithm.run()`