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pages = {107398},
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}
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# News
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* 2025/08 PyMIC has contained the implementation of [`DMSPS`][dmsps_paper], a state-of-the-art weakly supervised segmentation method by learning from scribble annotations.
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* 2025/05 Several self-supervised learning methods have been provided in PyMIC, including [`VolF`][volf_paper], [`VoCo`][voco_paper] and [`Vox2Vec`][vox2vec_paper].
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* 2025/01 Novel architectures are available now, such as `UMamba`, `VMUNet`, `SwinUNet`, `TransUNet` and `UNETR++`.
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[dmsps_paper]: https://www.sciencedirect.com/science/article/pii/S1361841524001993
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[volf_paper]: https://arxiv.org/abs/2306.16925
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[voco_paper]: https://arxiv.org/abs/2402.17300
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[vox2vec_paper]:https://conferences.miccai.org/2023/papers/712-Paper3421.html
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# Features
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PyMIC provides flixible modules for medical image computing tasks including classification and segmentation. It currently provides the following functions:
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* Support for annotation-efficient image segmentation, especially for semi-supervised, self-supervised, self-supervised, weakly-supervised and noisy-label learning.
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# Usage
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## Requirement
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* [Pytorch][torch_link] version >=1.0.1
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* [Pytorch][torch_link] version >=1.13.1
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* [TensorboardX][tbx_link] to visualize training performance
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* Some common python packages such as Numpy, Pandas, SimpleITK
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* causal-conv1d>=1.5.0 and mamba-ssm>=2.2.4 are required if you want to use Mamba in PyMIC.
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* See `requirements.txt` for details.
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[torch_link]:https://pytorch.org/
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```bash
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pip install PYMIC
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```
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To install a specific version of PYMIC such as 0.5.0, run:
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To install a specific version of PYMIC such as 0.5.4, run:
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```bash
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pip install PYMIC==0.5.0
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pip install PYMIC==0.5.4
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```
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Alternatively, you can download the source code for the latest version. Run the following command to compile and install:
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4, [UGIR][ugir] (MICCAI 2020) Uncertainty-guided interactive refinement for medical image segmentation.
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5, [DMSPS][dmsps] (MedIA 2024) Weakly supervised segmentation by learning from scribbles.
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[myops]: https://github.com/HiLab-git/MyoPS2020
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[coplenet]:https://github.com/HiLab-git/COPLE-Net
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[hn_gtv]: https://github.com/HiLab-git/Head-Neck-GTV
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[ugir]: https://github.com/HiLab-git/UGIR
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[dmsps]: https://github.com/HiLab-git/DMSPS
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