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Copy pathmodels.py
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118 lines (100 loc) · 4.65 KB
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import torch
import torch.nn as nn
from wcode.net.CNN.VNet.VNet import Encoder, Decoder
class VNet(nn.Module):
def __init__(self, params):
super(VNet, self).__init__()
self.need_features = params["need_features"]
self.deep_supervision = params["deep_supervision"]
self.encoder_params, self.decoder_params = self.get_EnDecoder_params(params)
self.encoder = Encoder(self.encoder_params)
self.decoder = Decoder(
self.decoder_params,
output_features=self.deep_supervision or self.need_features,
)
if len(params["kernel_size"][0]) == 2:
Conv_layer = nn.Conv2d
elif len(params["kernel_size"][0]) == 3:
Conv_layer = nn.Conv3d
if self.deep_supervision:
self.prediction_head = nn.ModuleList()
# we will not do deep supervision on the prediction of bottleneck output feature
# the prediction_heads are from low to high resolution.
for i in range(1, len(self.encoder_params["num_conv_per_stage"])):
self.prediction_head.append(
Conv_layer(
self.decoder_params["features"][i],
params["out_channels"],
kernel_size=1,
bias=params["need_bias"],
)
)
else:
self.prediction_head = Conv_layer(
self.decoder_params["features"][-1],
params["out_channels"],
kernel_size=1,
bias=params["need_bias"],
)
def forward(self, inputs):
encoder_out = self.encoder(inputs)
decoder_out = self.decoder(encoder_out)
if self.deep_supervision:
outputs = []
for i in range(len(decoder_out)):
outputs.append(self.prediction_head[i](decoder_out[i]))
# we assume that the multi-level prediction ranking ranges from high resolution to low resolution
if self.need_features:
net_out = {"feature": encoder_out + decoder_out, "pred": outputs[::-1]}
else:
net_out = {"pred": outputs[::-1]}
else:
if self.need_features:
outputs = self.prediction_head(decoder_out[-1])
net_out = {"feature": encoder_out + decoder_out, "pred": outputs}
else:
net_out = {"pred": self.prediction_head(decoder_out)}
return net_out
def get_EnDecoder_params(self, params):
encoder_params = {}
decoder_params = {}
encoder_params["in_channels"] = params["in_channels"]
encoder_params["features"] = params["features"]
encoder_params["dropout_p"] = params["dropout_p"]
encoder_params["num_conv_per_stage"] = params["num_conv_per_stage"]
encoder_params["kernel_size"] = params["kernel_size"]
encoder_params["pool_kernel_size"] = params["pool_kernel_size"]
encoder_params["normalization"] = params["normalization"]
encoder_params["activate"] = params["activate"]
encoder_params["need_bias"] = params["need_bias"]
assert (
len(encoder_params["features"])
== len(encoder_params["dropout_p"])
== len(encoder_params["num_conv_per_stage"])
== len(encoder_params["kernel_size"])
== (len(encoder_params["pool_kernel_size"]) + 1)
)
decoder_params["features"] = params["features"][::-1]
decoder_params["kernel_size"] = params["kernel_size"][::-1]
decoder_params["pool_kernel_size"] = params["pool_kernel_size"][::-1]
decoder_params["dropout_p"] = [0.0 for _ in range(len(params["dropout_p"]))]
decoder_params["num_conv_per_stage"] = params["num_conv_per_stage"][::-1]
decoder_params["normalization"] = params["normalization"]
decoder_params["activate"] = params["activate"]
decoder_params["need_bias"] = params["need_bias"]
return encoder_params, decoder_params
class BiNet(nn.Module):
def __init__(self, params):
super(BiNet, self).__init__()
self.net1 = VNet(params)
self.net2 = VNet(params)
def forward(self, x):
net1_out = self.net1(x)
net2_out = self.net2(x)
# if isinstance(net1_out["pred"], list) and isinstance(net2_out["pred"], list):
# pred = []
# for i in range(len(net1_out["pred"])):
# pred.append((net1_out["pred"][i] + net2_out["pred"][i]) / 2)
# else:
# pred = (net1_out["pred"] + net2_out["pred"]) / 2
return {"net1_out": net1_out, "net2_out": net2_out, "pred": net1_out["pred"]}