Fixing other files related to tagging release 0.2.0

Author: gregorgorjanc

AGENTS.md

@@ -42,8 +42,22 @@ Standing authorization for this repository:
 * Agents may use `curl` (or equivalent read-only HTTP tools) for repository
   and upstream references on:
   `github.com`, `api.github.com`, `raw.githubusercontent.com`,
-  `github.com/tskit-dev/tskit`, and `tskit.dev`
+  `github.com/tskit-dev/tskit`, `tskit.dev`,
+  `cran.r-project.org`, `cranchecks.info`, `badges.cranchecks.info`,
+  `r-pkg.org`, `cranlogs.r-pkg.org`, `img.shields.io`,
+  `codecov.io`, `app.codecov.io`, and `highlanderlab.r-universe.dev`
   (including issues, pull requests, comments, events, metadata, and docs).
+* For the above domains, agents should execute `curl` directly without asking
+  for extra confirmation in chat; if sandboxing requires escalation, submit the
+  escalated tool request immediately and continue.
+* To minimise repeated platform permission prompts, prefer these canonical
+  command forms (same flags and flag order):
+
+```sh
+curl -sS --max-time 15 <url>
+curl -I -sS --max-time 15 <url>
+```
+
 * This standing authorization does not override explicit user instructions or
   allow destructive commands that were not requested by the user.
 

README.md

@@ -33,18 +33,19 @@ to develop new `R` packages that can leverage `RcppTskit`.
 
 <!-- Row 1 -->
 General: [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental) <!-- Col-1-End -->
-[![Development](https://img.shields.io/badge/development-active-blue.svg)](https://img.shields.io/badge/development-active-blue.svg) <!-- Col-2-End -->
+[![Development](https://img.shields.io/badge/development-active-blue.svg)](https://github.com/HighlanderLab/RcppTskit?tab=readme-ov-file#development) <!-- Col-2-End -->
 [![Licence](https://img.shields.io/badge/licence-MIT-blue.svg)](https://opensource.org/licenses/MIT) <!-- Col-3-End -->
 
 <!-- Row 2 -->
 Release: [![CRAN version](https://www.r-pkg.org/badges/version/RcppTskit)](https://CRAN.R-project.org/package=RcppTskit) <!-- Col-1-End -->
 [![Downloads - total](https://cranlogs.r-pkg.org/badges/grand-total/RcppTskit)](https://cranlogs.r-pkg.org/badges/grand-total/RcppTskit) <!-- Col-2-End -->
-![GitHub version (main)](https://img.shields.io/github/r-package/v/HighlanderLab/RcppTskit/main?filename=RcppTskit%2FDESCRIPTION&label=Github) <!-- Col-3-End -->
+[![GitHub version (main)](https://img.shields.io/github/r-package/v/HighlanderLab/RcppTskit/main?filename=RcppTskit%2FDESCRIPTION&label=Github)](https://github.com/HighlanderLab/RcppTskit) <!-- Col-3-End -->
 
 <!-- Row 3 -->
-R CMD checks: [![CRAN](https://cranchecks.info/badges/summary/RcppTskit?label=CRAN)](https://cran.r-project.org/web/checks/check_results_RcppTskit.html) <!-- Col-1-End -->
-[![R universe](https://highlanderlab.r-universe.dev/RcppTskit/badges/checks?label=R-universe)](https://highlanderlab.r-universe.dev/RcppTskit) <!-- Col-2-End -->
-[![GitHub](https://img.shields.io/github/actions/workflow/status/HighlanderLab/RcppTskit/R-CMD-check.yaml?label=GitHub)](https://github.com/HighlanderLab/RcppTskit/actions/workflows/R-CMD-check.yaml) <!-- Col-3-End -->
+R CMD checks: [![CRAN summary](https://badges.cranchecks.info/summary/RcppTskit.svg)](https://cran.r-project.org/web/checks/check_results_RcppTskit.html) <!-- Col-1-End -->
+[![CRAN worst](https://badges.cranchecks.info/worst/RcppTskit.svg)](https://cran.r-project.org/web/checks/check_results_RcppTskit.html) <!-- Col-2-End -->
+[![R universe](https://highlanderlab.r-universe.dev/RcppTskit/badges/checks?label=R-universe)](https://highlanderlab.r-universe.dev/RcppTskit) <!-- Col-3-End -->
+[![GitHub](https://img.shields.io/github/actions/workflow/status/HighlanderLab/RcppTskit/R-CMD-check.yaml?label=GitHub)](https://github.com/HighlanderLab/RcppTskit/actions/workflows/R-CMD-check.yaml) <!-- Col-4-End -->
 
 <!-- Row 4 -->
 Code quality: [![Codecov test coverage](https://codecov.io/gh/HighlanderLab/RcppTskit/graph/badge.svg)](https://app.codecov.io/gh/HighlanderLab/RcppTskit) <!-- Col-1-End -->
@@ -73,19 +74,25 @@ To install the published release from
 [CRAN](https://cran.r-project.org/package=RcppTskit) use:
 
 ```
+# Install
 install.packages("RcppTskit")
+
+# Read the introduction to RcppTskit
 vignette("RcppTskit_intro")
 ```
 
 To install the latest development version (possibly unstable!) from
 [R universe](https://r-universe.dev) use:
 
 ```
+# Install
 r_universe_and_cran <- c(
   "https://highlanderlab.r-universe.dev",
   "https://cloud.r-project.org"
   )
 install.packages("RcppTskit", repos = r_universe_and_cran)
+
+# Read the introduction to RcppTskit
 vignette("RcppTskit_intro")
 ```
 
@@ -102,19 +109,18 @@ https://mac.r-project.org/tools for macOS tools.
 ```
 # install.packages("remotes") # If you don't have it already
 
-# Release
-# TODO: Tag a release #15
-#       https://github.com/HighlanderLab/RcppTskit/issues/15
-# remotes::install_github("HighlanderLab/RcppTskit/RcppTskit")
-
-# Main branch
+# Install the main branch
 remotes::install_github("HighlanderLab/RcppTskit/RcppTskit@main",
   build_vignettes=TRUE)
 
-# Development branch
+# Install the development branch
 remotes::install_github("HighlanderLab/RcppTskit/RcppTskit@devel",
   build_vignettes=TRUE)
 
+# Install a specific release (say, v0.2.0)
+remotes::install_github("HighlanderLab/RcppTskit/RcppTskit@v0.2.0")
+
+# Read the introduction to RcppTskit
 vignette("RcppTskit_intro")
 ```
 

RcppTskit/DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: RcppTskit
 Title: 'R' Access to the 'tskit C' API
-Version: 0.2.0
+Version: 0.2.0.9000
 Date: 2026-01-27
 Authors@R: c(
     person("Gregor", "Gorjanc", , "gregor.gorjanc@gmail.com", role = c("aut", "cre", "cph"),

RcppTskit/notes_pkg_dev.Rmd

@@ -252,6 +252,15 @@ use_release_issue(version = NULL) # https://usethis.r-lib.org/reference/use_rele
 # just follow tasks in there;)
 ```
 
+Tag a release:
+
+```
+git checkout main
+git pull --ff-only origin main
+git tag -a v0.2.0 eb6e19c -m "RcppTskit 0.2.0"
+git push origin v0.2.0
+```
+
 ## Dev tools setup / use
 
 ```