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[lfnothias]

PR Type

documentation, enhancement

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Description

• Update demo instance URL in README

• Add link for configuring LLM models

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Diagram Walkthrough

flowchart LR
  A["Update README.md"] -- "Change demo URL" --> B["New URL: metabot.holobiomicslab.eu"]
  A -- "Add LLM configuration link" --> C["Link to configuration guide"]

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File Walkthrough

	Relevant files
Documentation	README.md Update demo URL and add LLM config link                                    README.md Updated demo instance URL Added link for LLM model configuration +2/-2

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[qodo-code-review]

Review Summary by Qodo

Update README with corrected demo URL and configuration docs

📝 Documentation

Walkthroughs

Description

• Updated demo instance URL from .cnrs.fr to .eu domain
• Fixed demo link formatting with proper spacing
• Added reference link to LLM model configuration documentation

Diagram

flowchart LR
  A["README.md"] -->|Update demo URL| B["metabot.holobiomicslab.eu"]
  A -->|Add config docs link| C["LLM configuration guide"]
  A -->|Fix link formatting| D["Improved readability"]

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File Changes

1. README.md 📝 Documentation +2/-2

Update demo URL and add LLM configuration reference

• Updated demo instance URL from https://metabot.holobiomicslab.cnrs.fr to
 https://metabot.holobiomicslab.eu
• Fixed markdown link formatting by adding proper spacing around the URL
• Added reference link to external documentation for configuring additional LLM models

README.md

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[qodo-code-review]

Code Review by Qodo

🐞 Bugs (1) 📘 Rule violations (0) 📎 Requirement gaps (0)

1. Whitespace in URL link 🐞 Bug ⚙ Maintainability

Description

README.md includes leading spaces inside the Markdown link text and destination for the demo URL,
which can render oddly (visible leading space) and makes copy/paste of the displayed URL
error-prone. This is a documentation quality issue, not a runtime bug.

Code

README.md[16]

+🧪 MetaboT 🍵 is an AI system that accelerates mass spectrometry-based metabolomics data mining. Leveraging advanced large language models and knowledge graph technologies, 🧪 MetaboT 🍵 translates natural language queries into SPARQL requests—enabling researchers to explore and interpret complex metabolomics datasets. Built in Python and powered by state-of-the-art libraries, 🧪 MetaboT 🍵 offers an intuitive chat interface that bridges the gap between data complexity and user-friendly access. 🧪 MetaboT 🍵 can be installed locally and you can try our demo instance on an open [1,600 plant extract dataset](https://doi.org/10.1093/gigascience/giac124) available at [ https://metabot.holobiomicslab.eu]( https://metabot.holobiomicslab.eu).

Evidence

The demo URL is written with a leading space in both the bracketed label and the parenthesized
destination, so the rendered link text starts with a space and the raw Markdown is harder to
read/maintain.

README.md[16-16]

Agent prompt

The issue below was found during a code review. Follow the provided context and guidance below and implement a solution

### Issue description
The demo URL Markdown link contains leading spaces inside `[]` and `()`, which reduces readability and can lead to copy/paste mistakes.

### Issue Context
This is in the General Information paragraph where the demo instance URL is displayed.

### Fix Focus Areas
- README.md[16-16]

### Suggested change
Replace:
- `[ https://metabot.holobiomicslab.eu]( https://metabot.holobiomicslab.eu)`
with:
- `[https://metabot.holobiomicslab.eu](https://metabot.holobiomicslab.eu)`
(or simply `https://metabot.holobiomicslab.eu` if you don’t need a labeled link).

ⓘ Copy this prompt and use it to remediate the issue with your preferred AI generation tools

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[github-actions]

PR Reviewer Guide 🔍

Here are some key observations to aid the review process:

⏱️ Estimated effort to review: 1 🔵⚪⚪⚪⚪

🔒 No security concerns identified

⚡ Recommended focus areas for review Markdown Formatting The added markdown link contains extra spaces inside the square brackets and parentheses, which might affect proper rendering in some markdown parsers. It is recommended to remove these extraneous spaces. 🧪 MetaboT 🍵 is an AI system that accelerates mass spectrometry-based metabolomics data mining. Leveraging advanced large language models and knowledge graph technologies, 🧪 MetaboT 🍵 translates natural language queries into SPARQL requests—enabling researchers to explore and interpret complex metabolomics datasets. Built in Python and powered by state-of-the-art libraries, 🧪 MetaboT 🍵 offers an intuitive chat interface that bridges the gap between data complexity and user-friendly access. 🧪 MetaboT 🍵 can be installed locally and you can try our demo instance on an open [1,600 plant extract dataset](https://doi.org/10.1093/gigascience/giac124) available at [ https://metabot.holobiomicslab.eu]( https://metabot.holobiomicslab.eu).

[github-actions]

PR Code Suggestions ✨

Explore these optional code suggestions:

Category	Suggestion	Impact
General	Fix Markdown link formatting Remove the extra spaces inside the Markdown link to ensure proper rendering. Tighten the URL formatting for both the link text and the link target. README.md [16] -🧪 MetaboT 🍵 can be installed locally and you can try our demo instance on an open [1,600 plant extract dataset](https://doi.org/10.1093/gigascience/giac124) available at [ https://metabot.holobiomicslab.eu]( https://metabot.holobiomicslab.eu). +🧪 MetaboT 🍵 can be installed locally and you can try our demo instance on an open [1,600 plant extract dataset](https://doi.org/10.1093/gigascience/giac124) available at [https://metabot.holobiomicslab.eu](https://metabot.holobiomicslab.eu). Suggestion importance[1-10]: 5 __ Why: The suggestion correctly identifies extra spaces in the Markdown link and improves URL formatting. The impact is minor, addressing only readability, and the improved code accurately reflects the suggested change.	Low