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1111
1212Optimizations were performed using the following container images:
1313
14- * pyPESTO optimizers (scipy, nlopt, ...):
15- for Marvin, see [ pypesto-benchmark-docker/] ( pypesto-benchmark-docker/ ) ;
16- for FinisTerrae III see
14+ * pyPESTO optimizers (scipy, nlopt, ...):
15+ for Marvin, see [ pypesto-benchmark-docker/] ( pypesto-benchmark-docker/ ) ;
16+ for FinisTerrae III see
1717 [ pypesto-benchmark-docker-limited-storage/] ( pypesto-benchmark-docker-limited-storage/ )
1818
1919* for parPE-saCeSS, see https://github.com/davidrpenas/sacess_parpe
20+ [ ![ DOI] ( https://zenodo.org/badge/DOI/10.5281/zenodo.21294078.svg )] ( https://doi.org/10.5281/zenodo.21294078 )
2021
2122* pySaCeSS, see [ pyscat-benchmark-docker/] ( pyscat-benchmark-docker/ )
2223
2324The driver scripts for the optimizations
2425are [ optimize_with_fixed_pyscat_final.py] ( optimize_with_fixed_pyscat_final.py )
2526and [ single_file_save_with_timelimits.py] ( single_file_save_with_timelimits.py ) .
2627
27- The benchmark problems are available in the
28+ The benchmark problems are available in the
2829[ PEtab benchmark problem collection] ( https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab ) ;
2930version [ v2024.11.11] ( https://doi.org/10.5281/zenodo.18356087 ) was used.
30-
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