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### 3.5.0
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* Adds RNA downloads to PanCancer download tool `gnos_pull.pl`
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* Hardening of external process handling in `PCAP::Threaded`
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* Adds C version of `diff_bams`
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### 3.4.0
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* Significant speed up of BAM generation under `bwa_mem.pl` by using separate process to do compression of mark duplicate output and streaming BAS generation. Not possible to do this to CRAM in same way.
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### 3.3.4
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* Reduce disk usage when running `bwa_mem.pl`
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* Improve throughput via slightly unintuitive use of additional pipes
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### 3.3.0
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* adds `map_threads|mt` option to `bwa_mem.pl` to allow more control of parallel processing in one shot submission.
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* adds `bwa_pl|l` option to `bwa_mem.pl` to allow preload of different malloc libraries.
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