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Update all GitHub Actions.
Update all references to third-party GitHub Actions to use the current latest versions: * actions/checkout: v4 -> v6 * actions/upload-artifact: v4 -> v7 * actions/download-artifact: v4 -> v8 * NejcZdovc/comment-pr: v1.1.1 -> v2
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‎src/incatools/odk/templates/_dynamic_workflows.jinja2‎

Lines changed: 21 additions & 21 deletions
Original file line numberDiff line numberDiff line change
@@ -80,7 +80,7 @@ jobs:
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# Steps represent a sequence of tasks that will be executed as part of the job
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steps:
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# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Run ontology QC checks
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env:
@@ -106,28 +106,28 @@ jobs:
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runs-on: ubuntu-latest
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container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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# Checks-out main branch under "main" directory
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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with:
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ref: master
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path: master
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- name: Diff classification
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run: export ROBOT_JAVA_ARGS=-Xmx6G; robot diff --labels True --left master/src/ontology/{{ project.id }}-edit.{{ project.edit_format }} --left-catalog master/src/ontology/catalog-v001.xml --right src/ontology/{{ project.id }}-edit.{{ project.edit_format }} --right-catalog src/ontology/catalog-v001.xml -f markdown -o edit-diff.md
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- name: Upload diff
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uses: actions/upload-artifact@v4
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uses: actions/upload-artifact@v7
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with:
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name: edit-diff.md
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path: edit-diff.md
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classify_branch:
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runs-on: ubuntu-latest
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container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Classify ontology
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run: cd src/ontology; make IMP=FALSE PAT=FALSE MIR=FALSE {{ project.id }}.owl
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- name: Upload PR {{ project.id }}.owl
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uses: actions/upload-artifact@v4
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uses: actions/upload-artifact@v7
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with:
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name: {{ project.id }}-pr.owl
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path: src/ontology/{{ project.id }}.owl
@@ -136,13 +136,13 @@ jobs:
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runs-on: ubuntu-latest
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container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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with:
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ref: master
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- name: Classify ontology
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run: cd src/ontology; make IMP=FALSE PAT=FALSE MIR=FALSE {{ project.id }}.owl
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- name: Upload master {{ project.id }}.owl
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uses: actions/upload-artifact@v4
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uses: actions/upload-artifact@v7
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with:
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name: {{ project.id }}-master.owl
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path: src/ontology/{{ project.id }}.owl
@@ -154,31 +154,31 @@ jobs:
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runs-on: ubuntu-latest
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container: obolibrary/odklite:{% if env is defined -%}{{env['ODK_VERSION'] or "latest" }}{%- else %}latest{% endif %}
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Download master classification
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uses: actions/download-artifact@v4
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uses: actions/download-artifact@v8
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with:
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name: {{ project.id }}-master.owl
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path: src/ontology/{{ project.id }}-master.owl
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- name: Download PR classification
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uses: actions/download-artifact@v4
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uses: actions/download-artifact@v8
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with:
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name: {{ project.id }}-pr.owl
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path: src/ontology/{{ project.id }}-pr.owl
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- name: Diff classification
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run: export ROBOT_JAVA_ARGS=-Xmx6G; cd src/ontology; robot diff --labels True --left {{ project.id }}-master.owl/{{ project.id }}.owl --left-catalog catalog-v001.xml --right {{ project.id }}-pr.owl/{{ project.id }}.owl --right-catalog catalog-v001.xml -f markdown -o classification-diff.md
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- name: Upload diff
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uses: actions/upload-artifact@v4
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uses: actions/upload-artifact@v7
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with:
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name: classification-diff.md
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path: src/ontology/classification-diff.md
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post_comment:
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needs: [diff_classification, edit_file]
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Download reasoned diff
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uses: actions/download-artifact@v4
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uses: actions/download-artifact@v8
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with:
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name: classification-diff.md
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path: classification-diff.md
@@ -187,13 +187,13 @@ jobs:
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- name: Post reasoned comment
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env:
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GITHUB_TOKEN: {% raw %}${{ secrets.GITHUB_TOKEN }}{% endraw %}
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uses: NejcZdovc/comment-pr@v1.1.1
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uses: NejcZdovc/comment-pr@v2
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with:
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file: "../../comment.md"
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identifier: "REASONED"
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Download edit diff
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uses: actions/download-artifact@v4
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uses: actions/download-artifact@v8
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with:
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name: edit-diff.md
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path: edit-diff.md
@@ -202,7 +202,7 @@ jobs:
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- name: Post comment
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env:
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GITHUB_TOKEN: {% raw %}${{ secrets.GITHUB_TOKEN }}{% endraw %}
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uses: NejcZdovc/comment-pr@v1.1.1
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uses: NejcZdovc/comment-pr@v2
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with:
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file: "../../edit-comment.md"
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identifier: "UNREASONED"
@@ -226,15 +226,15 @@ jobs:
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post_diff:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/checkout@v6
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- name: Prepare release comment
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env:
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GITHUB_SHA: {% raw %}${{ github.sha }}{% endraw %}
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run: "echo \"[Here's a diff of how this release impacts {{ project.id }}.owl](https://github.com/obophenotype/{{ project.repo }}/blob/${% raw %}${{ env.GITHUB_SHA }}{% endraw %}/src/ontology/reports/release-diff.md)\" >comment.md"
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- name: Post reasoned comment
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env:
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GITHUB_TOKEN: {% raw %}${{ secrets.GITHUB_TOKEN }}{% endraw %}
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uses: NejcZdovc/comment-pr@v2.0.0
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uses: NejcZdovc/comment-pr@v2
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with:
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github_token: {% raw %}${{ env.GITHUB_TOKEN }}{% endraw %}
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file: "../../comment.md"
@@ -260,7 +260,7 @@ jobs:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout main
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uses: actions/checkout@v4
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uses: actions/checkout@v6
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- name: Deploy docs
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uses: mhausenblas/mkdocs-deploy-gh-pages@master

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