Miscellaneous software updates. (#1316)

Use the latest versions of:

* ROBOT (1.9.10);
* SSSOM-Java (1.10.0);
* the ODK ROBOT plugin (0.3.1);
* Mike Farah's `yq` tool (4.50.1).

Author: gouttegd

CONTRIBUTING.md

@@ -711,6 +711,7 @@ whenever a new release is in preparation.
 | Jena | https://jena.apache.org/download/ | |
 | Ammonite | https://github.com/lihaoyi/Ammonite/releases | to be removed in ODK 1.7 (replaced by Scala-CLI) |
 | Scala-CLI | https://github.com/VirtusLab/scala-cli/releases | |
+| Mike Farah’s YQ | https://github.com/mikefarah/yq/releases | |
 
 Python packages (e.g. the Ontology Access Kit aka `oaklib`) should be
 automatically updated to their latest version whenever Python

Dockerfile

@@ -15,7 +15,7 @@ ENV JENA_VERSION=4.9.0
 ENV KGCL_JAVA_VERSION=0.5.1
 ENV SCALA_CLI_VERSION=1.8.0
 ENV OWLTOOLS_VERSION=2020-04-06
-ENV YQ_VERSION=4.45.4
+ENV YQ_VERSION=4.50.1
 
 # Avoid repeated downloads of script dependencies by mounting the local coursier cache:
 # docker run -v $HOME/.coursier/cache/v1:/odk/tools/.coursier-cache ...

docker/odklite/Dockerfile

@@ -1,12 +1,12 @@
 FROM ubuntu:24.04
 LABEL maintainer="obo-tools@googlegroups.com"
 
-ENV ROBOT_VERSION=1.9.8
+ENV ROBOT_VERSION=1.9.10
 ENV DOSDP_VERSION=0.19.3
 ENV RELATION_GRAPH=2.3.3
 ENV DICER_VERSION=0.2.1
-ENV ODK_ROBOT_PLUGIN_VERSION=0.2.0
-ENV SSSOM_JAVA_VERSION=1.5.1
+ENV ODK_ROBOT_PLUGIN_VERSION=0.3.1
+ENV SSSOM_JAVA_VERSION=1.10.0
 
 WORKDIR /odk
 ENV JAVA_HOME="/usr"

docker/robot/Dockerfile

@@ -3,7 +3,7 @@ LABEL maintainer="obo-tools@googlegroups.com"
 
 WORKDIR /tools
 
-ENV ROBOT=v1.9.8
+ENV ROBOT=v1.9.10
 ARG ROBOT_JAR=https://github.com/ontodev/robot/releases/download/$ROBOT/robot.jar
 ENV ROBOT_JAR=${ROBOT_JAR}
 

docker/robot/Makefile

@@ -1,6 +1,6 @@
 
 # Building docker image
-VERSION = "v1.9.8"
+VERSION = "v1.9.10"
 IM=obolibrary/robot
 
 CACHE=