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Update OBO Extended Prefix Map from Bioregistry.
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‎resources/obo.epm.json‎

Lines changed: 80 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -4921,12 +4921,10 @@
49214921
"uri_prefix_synonyms": [
49224922
"http://bioregistry.io/OEO:",
49234923
"http://bioregistry.io/oeo:",
4924-
"http://openenergy-platform.org/ontology/oeo/OEO_",
49254924
"http://openenergyplatform.org/ontology/oeo/",
49264925
"http://openenergyplatform.org/ontology/oeo/OEO_",
49274926
"https://bioregistry.io/OEO:",
49284927
"https://bioregistry.io/oeo:",
4929-
"https://openenergy-platform.org/ontology/oeo/OEO_",
49304928
"https://openenergyplatform.org/ontology/oeo/"
49314929
]
49324930
},
@@ -6257,6 +6255,7 @@
62576255
"SNOMEDCT_US_2023_10_01",
62586256
"SNOMEDCT_US_2023_11_01",
62596257
"SNOMEDCT_US_2024_03_01",
6258+
"SNOMEDCT_US_2025_09_01",
62606259
"SNOMED_CT",
62616260
"SNOMED_CT_US_2018_03_01",
62626261
"SNOWMEDCT",
@@ -6293,6 +6292,7 @@
62936292
"snomedct_us_2023_10_01",
62946293
"snomedct_us_2023_11_01",
62956294
"snomedct_us_2024_03_01",
6295+
"snomedct_us_2025_09_01",
62966296
"snomedctct",
62976297
"snomedctct_2018_03_01",
62986298
"snomedctct_2019_03_01",
@@ -6335,6 +6335,7 @@
63356335
"http://bioregistry.io/SNOMEDCT_US_2023_10_01:",
63366336
"http://bioregistry.io/SNOMEDCT_US_2023_11_01:",
63376337
"http://bioregistry.io/SNOMEDCT_US_2024_03_01:",
6338+
"http://bioregistry.io/SNOMEDCT_US_2025_09_01:",
63386339
"http://bioregistry.io/SNOMED_CT:",
63396340
"http://bioregistry.io/SNOMED_CT_US_2018_03_01:",
63406341
"http://bioregistry.io/SNOWMEDCT:",
@@ -6380,6 +6381,7 @@
63806381
"https://bioregistry.io/SNOMEDCT_US_2023_10_01:",
63816382
"https://bioregistry.io/SNOMEDCT_US_2023_11_01:",
63826383
"https://bioregistry.io/SNOMEDCT_US_2024_03_01:",
6384+
"https://bioregistry.io/SNOMEDCT_US_2025_09_01:",
63836385
"https://bioregistry.io/SNOMED_CT:",
63846386
"https://bioregistry.io/SNOMED_CT_US_2018_03_01:",
63856387
"https://bioregistry.io/SNOWMEDCT:",
@@ -13355,23 +13357,6 @@
1335513357
"https://identifiers.org/datanator.gene:"
1335613358
]
1335713359
},
13358-
{
13359-
"pattern": "^[A-Z\\-]+$",
13360-
"prefix": "datanator.metabolite",
13361-
"prefix_synonyms": [
13362-
"DATANATOR.METABOLITE"
13363-
],
13364-
"uri_prefix": "https://www.datanator.info/metabolite/",
13365-
"uri_prefix_synonyms": [
13366-
"http://bioregistry.io/datanator.metabolite:",
13367-
"http://identifiers.org/datanator.metabolite/",
13368-
"http://identifiers.org/datanator.metabolite:",
13369-
"http://www.datanator.info/metabolite/",
13370-
"https://bioregistry.io/datanator.metabolite:",
13371-
"https://identifiers.org/datanator.metabolite/",
13372-
"https://identifiers.org/datanator.metabolite:"
13373-
]
13374-
},
1337513360
{
1337613361
"pattern": "^.*?--%3E.*?$",
1337713362
"prefix": "datanator.reaction",
@@ -13737,6 +13722,18 @@
1373713722
"https://www.w3.org/ns/dcat#"
1373813723
]
1373913724
},
13725+
{
13726+
"prefix": "dcatap",
13727+
"prefix_synonyms": [
13728+
"DCATAP"
13729+
],
13730+
"uri_prefix": "http://data.europa.eu/r5r/",
13731+
"uri_prefix_synonyms": [
13732+
"http://bioregistry.io/dcatap:",
13733+
"https://bioregistry.io/dcatap:",
13734+
"https://data.europa.eu/r5r/"
13735+
]
13736+
},
1374013737
{
1374113738
"prefix": "dcterms",
1374213739
"prefix_synonyms": [
@@ -14746,6 +14743,18 @@
1474614743
"https://usefulinc.com/ns/doap#"
1474714744
]
1474814745
},
14746+
{
14747+
"prefix": "docbias",
14748+
"prefix_synonyms": [
14749+
"DOCBIAS"
14750+
],
14751+
"uri_prefix": "https://nobias-project.eu/nobias/",
14752+
"uri_prefix_synonyms": [
14753+
"http://bioregistry.io/docbias:",
14754+
"http://nobias-project.eu/nobias/",
14755+
"https://bioregistry.io/docbias:"
14756+
]
14757+
},
1474914758
{
1475014759
"prefix": "docid",
1475114760
"prefix_synonyms": [
@@ -16555,6 +16564,18 @@
1655516564
"https://n2t.net/epd:"
1655616565
]
1655716566
},
16567+
{
16568+
"prefix": "epos",
16569+
"prefix_synonyms": [
16570+
"EPOS"
16571+
],
16572+
"uri_prefix": "https://www.epos-eu.org/epos-dcat-ap#",
16573+
"uri_prefix_synonyms": [
16574+
"http://bioregistry.io/epos:",
16575+
"http://www.epos-eu.org/epos-dcat-ap#",
16576+
"https://bioregistry.io/epos:"
16577+
]
16578+
},
1655816579
{
1655916580
"pattern": "^\\d{7}$",
1656016581
"prefix": "epso",
@@ -21629,21 +21650,31 @@
2162921650
"pattern": "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])?$",
2163021651
"prefix": "inchikey",
2163121652
"prefix_synonyms": [
21632-
"INCHIKEY"
21653+
"DATANATOR.METABOLITE",
21654+
"INCHIKEY",
21655+
"datanator.metabolite"
2163321656
],
2163421657
"uri_prefix": "https://www.chemspider.com/search?params=",
2163521658
"uri_prefix_synonyms": [
21659+
"http://bioregistry.io/datanator.metabolite:",
2163621660
"http://bioregistry.io/inchikey:",
21661+
"http://identifiers.org/datanator.metabolite/",
21662+
"http://identifiers.org/datanator.metabolite:",
2163721663
"http://identifiers.org/inchikey/",
2163821664
"http://identifiers.org/inchikey:",
2163921665
"http://n2t.net/inchikey:",
2164021666
"http://scholia.toolforge.org/inchikey/",
2164121667
"http://www.chemspider.com/search?params=",
21668+
"http://www.datanator.info/metabolite/",
21669+
"https://bioregistry.io/datanator.metabolite:",
2164221670
"https://bioregistry.io/inchikey:",
21671+
"https://identifiers.org/datanator.metabolite/",
21672+
"https://identifiers.org/datanator.metabolite:",
2164321673
"https://identifiers.org/inchikey/",
2164421674
"https://identifiers.org/inchikey:",
2164521675
"https://n2t.net/inchikey:",
21646-
"https://scholia.toolforge.org/inchikey/"
21676+
"https://scholia.toolforge.org/inchikey/",
21677+
"https://www.datanator.info/metabolite/"
2164721678
]
2164821679
},
2164921680
{
@@ -21918,10 +21949,10 @@
2191821949
"prefix_synonyms": [
2191921950
"IOFCORE"
2192021951
],
21921-
"uri_prefix": "https://spec.industrialontologies.org/ontology/core/Core/",
21952+
"uri_prefix": "https://spec.industrialontologies.org/ontology/",
2192221953
"uri_prefix_synonyms": [
2192321954
"http://bioregistry.io/iofcore:",
21924-
"http://spec.industrialontologies.org/ontology/core/Core/",
21955+
"http://spec.industrialontologies.org/ontology/",
2192521956
"https://bioregistry.io/iofcore:"
2192621957
]
2192721958
},
@@ -25818,7 +25849,9 @@
2581825849
"uri_prefix": "http://purls.helmholtz-metadaten.de/mwo/mwo_",
2581925850
"uri_prefix_synonyms": [
2582025851
"http://bioregistry.io/mwo:",
25852+
"http://purls.helmholtz-metadaten.de/mwo/",
2582125853
"https://bioregistry.io/mwo:",
25854+
"https://purls.helmholtz-metadaten.de/mwo/",
2582225855
"https://purls.helmholtz-metadaten.de/mwo/mwo_"
2582325856
]
2582425857
},
@@ -27955,6 +27988,18 @@
2795527988
"https://www.opengis.net/ont/sf#"
2795627989
]
2795727990
},
27991+
{
27992+
"prefix": "ohdab",
27993+
"prefix_synonyms": [
27994+
"OHDAB"
27995+
],
27996+
"uri_prefix": "https://database.factgrid.de/entity/",
27997+
"uri_prefix_synonyms": [
27998+
"http://bioregistry.io/ohdab:",
27999+
"http://database.factgrid.de/entity/",
28000+
"https://bioregistry.io/ohdab:"
28001+
]
28002+
},
2795828003
{
2795928004
"pattern": "^[\\d.]+$",
2796028005
"prefix": "oid",
@@ -39187,36 +39232,36 @@
3918739232
},
3918839233
{
3918939234
"pattern": "^[0-9]+\\.[0-9]+$",
39190-
"prefix": "vmhgene",
39235+
"prefix": "vmh.gene",
3919139236
"prefix_synonyms": [
39192-
"VMHGENE"
39237+
"VMH.GENE"
3919339238
],
3919439239
"uri_prefix": "https://www.vmh.life/#gene/",
3919539240
"uri_prefix_synonyms": [
39196-
"http://bioregistry.io/vmhgene:",
39241+
"http://bioregistry.io/vmh.gene:",
3919739242
"http://identifiers.org/vmhgene/",
3919839243
"http://identifiers.org/vmhgene:",
3919939244
"http://www.vmh.life/#gene/",
39200-
"https://bioregistry.io/vmhgene:",
39245+
"https://bioregistry.io/vmh.gene:",
3920139246
"https://identifiers.org/vmhgene/",
3920239247
"https://identifiers.org/vmhgene:"
3920339248
]
3920439249
},
3920539250
{
3920639251
"pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$",
39207-
"prefix": "vmhmetabolite",
39252+
"prefix": "vmh.metabolite",
3920839253
"prefix_synonyms": [
39209-
"VMHMETABOLITE"
39254+
"VMH.METABOLITE"
3921039255
],
3921139256
"uri_prefix": "https://www.vmh.life/#metabolite/",
3921239257
"uri_prefix_synonyms": [
39213-
"http://bioregistry.io/vmhmetabolite:",
39258+
"http://bioregistry.io/vmh.metabolite:",
3921439259
"http://identifiers.org/vmhmetabolite/",
3921539260
"http://identifiers.org/vmhmetabolite:",
3921639261
"http://n2t.net/vmhmetabolite:",
3921739262
"http://vmh.uni.lu/#metabolite/",
3921839263
"http://www.vmh.life/#metabolite/",
39219-
"https://bioregistry.io/vmhmetabolite:",
39264+
"https://bioregistry.io/vmh.metabolite:",
3922039265
"https://identifiers.org/vmhmetabolite/",
3922139266
"https://identifiers.org/vmhmetabolite:",
3922239267
"https://n2t.net/vmhmetabolite:",
@@ -39225,19 +39270,19 @@
3922539270
},
3922639271
{
3922739272
"pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$",
39228-
"prefix": "vmhreaction",
39273+
"prefix": "vmh.reaction",
3922939274
"prefix_synonyms": [
39230-
"VMHREACTION"
39275+
"VMH.REACTION"
3923139276
],
3923239277
"uri_prefix": "https://www.vmh.life/#reaction/",
3923339278
"uri_prefix_synonyms": [
39234-
"http://bioregistry.io/vmhreaction:",
39279+
"http://bioregistry.io/vmh.reaction:",
3923539280
"http://identifiers.org/vmhreaction/",
3923639281
"http://identifiers.org/vmhreaction:",
3923739282
"http://n2t.net/vmhreaction:",
3923839283
"http://vmh.uni.lu/#reaction/",
3923939284
"http://www.vmh.life/#reaction/",
39240-
"https://bioregistry.io/vmhreaction:",
39285+
"https://bioregistry.io/vmh.reaction:",
3924139286
"https://identifiers.org/vmhreaction/",
3924239287
"https://identifiers.org/vmhreaction:",
3924339288
"https://n2t.net/vmhreaction:",

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