Adaptations to VoronoiFVM v3

Author: j-fu

.github/dependabot.yml

@@ -0,0 +1,10 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "daily"
+  - package-ecosystem: "julia"
+    directory: "/"
+    schedule:
+      interval: "daily"

Project.toml

@@ -50,7 +50,7 @@ PreallocationTools = "0.4"
 PythonCall = "0.9"
 PythonPlot = "1"
 Revise = "3.12.1"
-VoronoiFVM = "2.14"
+VoronoiFVM = "2.14, 3"
 julia = "1.11"
 
 [extras]

notebooks/HalfCellAppliedPotential.jl

@@ -94,7 +94,7 @@ p1 = let
     fig, ax = pyplot.subplots(1, 1)
     fig.set_size_inches(600 / 100, 300 / 100)
     κ = 10
-    ax.set_title("Double layer capacitance, κ=$(κ)\n Dashed: witghout dielectric decrement")
+    ax.set_title("Double layer capacitance, κ=$(κ)\n Dashed: without dielectric decrement")
     set_κ!(halfcell, κ)
     set_κ!(halfcelldd, κ)
     for i in 1:length(molarities)

notebooks/ICMPBP-DD-Draft.jl

@@ -23,6 +23,7 @@ begin
     using Revise
     using PlutoUI, HypertextLiteral, UUIDs
     using VoronoiFVM
+    using VoronoiFVM: data
     using ExtendableGrids
     using LinearAlgebra
     using LessUnitful

notebooks/ICMPBP-EndOfHackathon.jl

@@ -23,6 +23,7 @@ begin
     using Revise
     using PlutoUI, HypertextLiteral, UUIDs
     using VoronoiFVM
+    using VoronoiFVM: data
     using ExtendableGrids
     using LinearAlgebra
     using LessUnitful

notebooks/SymmetricCellSurfaceCharge-Interactive.jl

@@ -23,6 +23,7 @@ begin
     using Revise
     using PlutoUI, HypertextLiteral, UUIDs
     using VoronoiFVM
+	using VoronoiFVM: data
     using ExtendableGrids
     using LinearAlgebra
     using LessUnitful