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Update to IDC v24 + cleanup/improvements#16

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fedorov merged 5 commits into
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idc-v24
May 7, 2026
Merged

Update to IDC v24 + cleanup/improvements#16
fedorov merged 5 commits into
mainfrom
idc-v24

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@fedorov fedorov commented May 7, 2026

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fedorov and others added 5 commits May 7, 2026 12:44
- Bump idc-index requirement to 0.12.1 (idc-index-data 24.0.4, IDC data version v24)
- IDC v24: 176 collections (+15), 1,032,911 series, 99.27 TB
- Rename collections_index columns to snake_case (CancerTypes → cancer_types,
  TumorLocations → tumor_locations, Subjects → subjects, Species → species,
  Sources → sources, SupportingData → supporting_data, Program → program_id)
- Rename analysis_results_index columns to snake_case (Subjects → subjects,
  Collections → collections, Modalities → modalities)
- Update all "Tested with" headers in reference guides
- Update versioned URL/dataset examples (idc-store-v24, idc_v24)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
33 tests covering all SQL examples in references/bigquery_guide.md,
validated via `bq query --dry_run` (no data scanned, no cost). Skips
automatically when the bq CLI is unavailable or unauthenticated.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
- Pin idc-index version in auto-upgrade subprocess call to REQUIRED_VERSION
- Document expected network endpoints in Overview (GCS, S3, BigQuery, DICOMweb)
- Add tested-with comment for optional dependencies

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
- Tighten frontmatter description to be directive about triggering
- Add compatibility/allowed-tools: [Bash, Read, WebFetch, WebSearch]
- Extract batch processing and analysis pipeline sections to use_cases.md
- SKILL.md: 865 → 775 lines

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@fedorov fedorov merged commit 1cf36bc into main May 7, 2026
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