Conversation
- Bump idc-index requirement to 0.12.1 (idc-index-data 24.0.4, IDC data version v24) - IDC v24: 176 collections (+15), 1,032,911 series, 99.27 TB - Rename collections_index columns to snake_case (CancerTypes → cancer_types, TumorLocations → tumor_locations, Subjects → subjects, Species → species, Sources → sources, SupportingData → supporting_data, Program → program_id) - Rename analysis_results_index columns to snake_case (Subjects → subjects, Collections → collections, Modalities → modalities) - Update all "Tested with" headers in reference guides - Update versioned URL/dataset examples (idc-store-v24, idc_v24) Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
33 tests covering all SQL examples in references/bigquery_guide.md, validated via `bq query --dry_run` (no data scanned, no cost). Skips automatically when the bq CLI is unavailable or unauthenticated. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
- Pin idc-index version in auto-upgrade subprocess call to REQUIRED_VERSION - Document expected network endpoints in Overview (GCS, S3, BigQuery, DICOMweb) - Add tested-with comment for optional dependencies Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
- Tighten frontmatter description to be directive about triggering - Add compatibility/allowed-tools: [Bash, Read, WebFetch, WebSearch] - Extract batch processing and analysis pipeline sections to use_cases.md - SKILL.md: 865 → 775 lines Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.