Skip to content

ENH: Convert ExternalData .md5 tags to .cid (IPFS content IDs) #39

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
hjmjohnson wants to merge 2 commits into
base: main
Choose a base branch
from
Open

ENH: Convert ExternalData .md5 tags to .cid (IPFS content IDs) #39

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
0e2e081
ENH: Convert ExternalData .md5 tags to .cid (IPFS content IDs)
hjmjohnson Apr 29, 2026
d65ee2e
BUG: Disable 5 tests with orphaned CMU-1.svs / CMU-3.ndpi
hjmjohnson Apr 29, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
60 changes: 32 additions & 28 deletions test/CMakeLists.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,10 +6,11 @@ set(IOOpenSlideTests

CreateTestDriver(IOOpenSlide "${IOOpenSlide-Test_LIBRARIES}" "${IOOpenSlideTests}")

itk_add_test(NAME itkOpenSlideTestMetaData
COMMAND IOOpenSlideTestDriver
itkOpenSlideTestMetaData DATA{Input/CMU-1.svs} ${ITK_TEST_OUTPUT_DIR}/MetaDataTest.txt DATA{Input/CMU-1.svs.txt}
)
# Disabled: CMU-1.svs is orphaned (404 from gh-pages, Girder, itk.org).
# itk_add_test(NAME itkOpenSlideTestMetaData
# COMMAND IOOpenSlideTestDriver
# itkOpenSlideTestMetaData DATA{Input/CMU-1.svs} ${ITK_TEST_OUTPUT_DIR}/MetaDataTest.txt DATA{Input/CMU-1.svs.txt}
# )

itk_add_test(NAME itkOpenSlideTestBasicIO
COMMAND IOOpenSlideTestDriver
Expand All @@ -23,28 +24,31 @@ itk_add_test(NAME itkOpenSlideTestAssociatedImage
itkOpenSlideImageIOTest DATA{Input/CMU-1-Small-Region.svs} ${ITK_TEST_OUTPUT_DIR}/CMU-1-Small-Region-label.mha associatedImage=label compress
)

itk_add_test(NAME itkOpenSlideTestLevel
COMMAND IOOpenSlideTestDriver
--compare DATA{Input/CMU-3-level-7.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-3-level-7.mha
itkOpenSlideImageIOTest DATA{Input/CMU-3.ndpi} ${ITK_TEST_OUTPUT_DIR}/CMU-3-level-7.mha level=7 compress
)

itk_add_test(NAME itkOpenSlideTestDownsample
COMMAND IOOpenSlideTestDriver
--compare DATA{Input/CMU-3-level-7.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-3-downsample-129.mha
itkOpenSlideImageIOTest DATA{Input/CMU-3.ndpi} ${ITK_TEST_OUTPUT_DIR}/CMU-3-downsample-129.mha downsample=129 compress
)

# Disabled: CMU-3.ndpi is orphaned (404 from gh-pages, Girder, itk.org).
# itk_add_test(NAME itkOpenSlideTestLevel
# COMMAND IOOpenSlideTestDriver
# --compare DATA{Input/CMU-3-level-7.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-3-level-7.mha
# itkOpenSlideImageIOTest DATA{Input/CMU-3.ndpi} ${ITK_TEST_OUTPUT_DIR}/CMU-3-level-7.mha level=7 compress
# )

# Disabled: CMU-3.ndpi is orphaned (404 from gh-pages, Girder, itk.org).
# itk_add_test(NAME itkOpenSlideTestDownsample
# COMMAND IOOpenSlideTestDriver
# --compare DATA{Input/CMU-3-level-7.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-3-downsample-129.mha
# itkOpenSlideImageIOTest DATA{Input/CMU-3.ndpi} ${ITK_TEST_OUTPUT_DIR}/CMU-3-downsample-129.mha downsample=129 compress
# )

# Disabled: CMU-1.svs is orphaned (404 from gh-pages, Girder, itk.org).
# Compress cannot be used here since stream writing will not be supported
itk_add_test(NAME itkOpenSlideTestApproximateStreaming
COMMAND IOOpenSlideTestDriver
--compare DATA{Input/CMU-1-level-1-stream-200.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1-stream-200.mha
itkOpenSlideImageIOTest DATA{Input/CMU-1.svs} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1-stream-200.mha level=1 stream=200 approximateStreaming
)

itk_add_test(NAME itkOpenSlideTestStreaming
COMMAND IOOpenSlideTestDriver
--compare DATA{Input/CMU-1-level-1.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1.mha
itkOpenSlideImageIOTest DATA{Input/CMU-1.svs} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1.mha level=1 stream=200
)

# itk_add_test(NAME itkOpenSlideTestApproximateStreaming
# COMMAND IOOpenSlideTestDriver
# --compare DATA{Input/CMU-1-level-1-stream-200.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1-stream-200.mha
# itkOpenSlideImageIOTest DATA{Input/CMU-1.svs} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1-stream-200.mha level=1 stream=200 approximateStreaming
# )

# Disabled: CMU-1.svs is orphaned (404 from gh-pages, Girder, itk.org).
# itk_add_test(NAME itkOpenSlideTestStreaming
# COMMAND IOOpenSlideTestDriver
# --compare DATA{Input/CMU-1-level-1.mha} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1.mha
# itkOpenSlideImageIOTest DATA{Input/CMU-1.svs} ${ITK_TEST_OUTPUT_DIR}/CMU-1-level-1.mha level=1 stream=200
# )
1 change: 0 additions & 1 deletion test/Input/CMU-1.svs.md5
View file
Open in desktop

This file was deleted.

1 change: 1 addition & 0 deletions test/Input/CMU-1.svs.txt.cid
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
bafkreid4uhb44emttyxitshuun6r5a3edv4ngyw6twrwbrvyhfyvwy5hna
1 change: 0 additions & 1 deletion test/Input/CMU-1.svs.txt.md5
View file
Open in desktop

This file was deleted.

1 change: 1 addition & 0 deletions test/Input/CMU-3-level-7.mha.cid
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
bafkreigkhgdngifjevvqqkiep5nrwwxdz4ofko4bhz3bv2wqqtfltofuiy
1 change: 0 additions & 1 deletion test/Input/CMU-3-level-7.mha.md5
View file
Open in desktop

This file was deleted.

1 change: 0 additions & 1 deletion test/Input/CMU-3.ndpi.md5
View file
Open in desktop

This file was deleted.

Loading