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extend github workflows with build with clang (#160)
* extend github workflows with build with clang * address comments
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‎.github/dependabot.yml‎

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directory: "/"
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schedule:
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interval: "weekly"
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day: "saturday"
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rebase-strategy: "disabled"

‎.github/workflows/build-with-clang.yml‎

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name: Build project with IntelLLVM clang compiler
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on:
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pull_request:
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push:
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branches: [master]
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permissions: read-all
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jobs:
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build-with-clang:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python: ["3.9", "3.10", "3.11", "3.12"]
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numpy_version: ["numpy'<2'", "numpy'>=2'"]
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env:
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ONEAPI_ROOT: /opt/intel/oneapi
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defaults:
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run:
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shell: bash -el {0}
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steps:
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- name: Cancel Previous Runs
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uses: styfle/cancel-workflow-action@0.12.1
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with:
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access_token: ${{ github.token }}
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- name: Add Intel repository
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run: |
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wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
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sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
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rm GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB
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sudo add-apt-repository "deb https://apt.repos.intel.com/oneapi all main"
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sudo apt-get update
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- name: Install Intel OneAPI
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run: |
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sudo apt-get install intel-oneapi-compiler-dpcpp-cpp
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sudo apt-get install intel-oneapi-tbb
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sudo apt-get install intel-oneapi-mkl-devel
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- name: Setup Python
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python }}
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architecture: x64
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- name: Checkout repo
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Install mkl_fft dependencies
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run: |
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pip install cython setuptools">=77"
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pip install ${{ matrix.numpy_version }}
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- name: List oneAPI folder content
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run: ls ${{ env.ONEAPI_ROOT }}/compiler
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- name: Build mkl_fft
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run: |
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source ${{ env.ONEAPI_ROOT }}/setvars.sh
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echo $CMPLR_ROOT
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export CC=$CMPLR_ROOT/bin/icx
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export CFLAGS="${CFLAGS} -fno-fast-math -O2"
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pip install -e . --no-build-isolation --no-deps --verbose
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- name: Run mkl_fft tests
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run: |
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source ${{ env.ONEAPI_ROOT }}/setvars.sh
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pip install scipy mkl-service pytest
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pytest -s -v --pyargs mkl_fft

‎.github/workflows/conda-package-cf.yml‎

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matrix:
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python: ['3.9', '3.10', '3.11', '3.12']
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steps:
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- name: Cancel Previous Runs
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uses: styfle/cancel-workflow-action@0.12.1
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with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Set pkgs_dirs
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run: |
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echo "pkgs_dirs: [~/.conda/pkgs]" >> ~/.condarc
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- name: Cache conda packages
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uses: actions/cache@v4
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env:
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- name: Add conda to system path
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run: echo $CONDA/bin >> $GITHUB_PATH
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- name: Install conda-build
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run: conda install conda-build
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- name: Build conda package with NumPy 2.0
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run: |
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CHANNELS="-c conda-forge --override-channels"
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$VERSIONS \
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$CHANNELS \
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conda-recipe-cf
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- name: Upload artifact
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uses: actions/upload-artifact@v4
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with:
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uses: actions/download-artifact@v4
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with:
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name: ${{ env.PACKAGE_NAME }} ${{ runner.os }} Python ${{ matrix.python_ver }}
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- name: Add conda to system path
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run: echo $CONDA/bin >> $GITHUB_PATH
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- name: Install conda-build
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run: conda install conda-build
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- name: Create conda channel
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run: |
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mkdir -p $GITHUB_WORKSPACE/channel/linux-64
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run: |
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CHANNELS="-c $GITHUB_WORKSPACE/channel ${{ env.CHANNELS }}"
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conda create -n ${{ env.TEST_ENV_NAME }} $PACKAGE_NAME python=${{ matrix.python_ver }} ${{ matrix.numpy }} $CHANNELS --only-deps --dry-run > lockfile
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- name: Display lockfile
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run: cat lockfile
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- name: Set pkgs_dirs
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run: |
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echo "pkgs_dirs: [~/.conda/pkgs]" >> ~/.condarc
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- name: Cache conda packages
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uses: actions/cache@v4
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env:
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conda create -n ${{ env.TEST_ENV_NAME }} python=${{ matrix.python_ver }} ${{ matrix.numpy }} $PACKAGE_NAME pytest scipy $CHANNELS
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# Test installed packages
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conda list -n ${{ env.TEST_ENV_NAME }}
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- name: Run tests
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run: |
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source $CONDA/etc/profile.d/conda.sh
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matrix:
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python: ['3.9', '3.10', '3.11', '3.12']
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steps:
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- name: Cancel Previous Runs
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uses: styfle/cancel-workflow-action@0.12.1
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with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- uses: conda-incubator/setup-miniconda@v3
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with:
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miniforge-version: latest
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defaults:
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run:
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shell: cmd /C CALL {0}
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strategy:
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matrix:
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python_ver: ['3.9', '3.10', '3.11', '3.12']
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shell: cmd /C CALL {0}
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run: |
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conda search ${{ env.PACKAGE_NAME }} -c ${{ env.workdir }}/channel --override-channels --info --json > ${{ env.workdir }}\ver.json
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- name: Output content of produced ver.json
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shell: pwsh
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run: Get-Content -Path ${{ env.workdir }}\ver.json
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- name: Collect dependencies
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shell: cmd /C CALL {0}
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run: |
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SET PACKAGE_VERSION=%%F
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)
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conda install -n ${{ env.TEST_ENV_NAME }} ${{ env.PACKAGE_NAME }}=%PACKAGE_VERSION% python=${{ matrix.python_ver }} ${{ matrix.numpy }} -c ${{ env.workdir }}/channel ${{ env.CHANNELS }} --only-deps --dry-run > lockfile
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- name: Display lockfile content
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shell: pwsh
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run: Get-Content -Path .\lockfile
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- name: Cache conda packages
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uses: actions/cache@v4
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env:
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restore-keys: |
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${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-python-${{ matrix.python_ver }}-
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${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-
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- name: Install mkl_fft
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shell: cmd /C CALL {0}
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run: |
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)
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SET "TEST_DEPENDENCIES=pytest pytest-cov"
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conda install -n ${{ env.TEST_ENV_NAME }} ${{ env.PACKAGE_NAME }}=%PACKAGE_VERSION% %TEST_DEPENDENCIES% python=${{ matrix.python }} ${{ matrix.numpy }} scipy -c ${{ env.workdir }}/channel ${{ env.CHANNELS }}
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- name: Report content of test environment
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shell: cmd /C CALL {0}
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run: |
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echo "Value of CONDA enviroment variable was: " %CONDA%
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echo "Value of CONDA_PREFIX enviroment variable was: " %CONDA_PREFIX%
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conda info && conda list -n ${{ env.TEST_ENV_NAME }}
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- name: Run tests
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shell: cmd /C CALL {0}
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run: >-

‎.github/workflows/conda-package.yml‎

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matrix:
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python: ['3.9', '3.10', '3.11', '3.12']
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steps:
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- name: Cancel Previous Runs
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uses: styfle/cancel-workflow-action@0.12.1
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with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Set pkgs_dirs
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run: |
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echo "pkgs_dirs: [~/.conda/pkgs]" >> ~/.condarc
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- name: Cache conda packages
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uses: actions/cache@v4
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env:
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- name: Add conda to system path
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run: echo $CONDA/bin >> $GITHUB_PATH
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- name: Install conda-build
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run: conda install conda-build
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- name: Build conda package
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run: |
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CHANNELS="-c conda-forge -c https://software.repos.intel.com/python/conda --override-channels"
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$VERSIONS \
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$CHANNELS \
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conda-recipe
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- name: Upload artifact
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uses: actions/upload-artifact@v4
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with:
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uses: actions/download-artifact@v4
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with:
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name: ${{ env.PACKAGE_NAME }} ${{ runner.os }} Python ${{ matrix.python }}
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- name: Add conda to system path
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run: echo $CONDA/bin >> $GITHUB_PATH
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- name: Install conda-build
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run: conda install conda-build
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- name: Create conda channel
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run: |
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mkdir -p $GITHUB_WORKSPACE/channel/linux-64
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run: |
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CHANNELS="-c $GITHUB_WORKSPACE/channel ${{ env.CHANNELS }}"
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conda create -n ${{ env.TEST_ENV_NAME }} $PACKAGE_NAME python=${{ matrix.python }} $CHANNELS --only-deps --dry-run > lockfile
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- name: Display lockfile
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run: cat lockfile
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- name: Set pkgs_dirs
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run: |
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echo "pkgs_dirs: [~/.conda/pkgs]" >> ~/.condarc
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- name: Cache conda packages
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uses: actions/cache@v4
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env:
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conda create -n ${{ env.TEST_ENV_NAME }} python=${{ matrix.python }} $PACKAGE_NAME pytest scipy $CHANNELS
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# Test installed packages
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conda list -n ${{ env.TEST_ENV_NAME }}
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- name: Run tests
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run: |
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source $CONDA/etc/profile.d/conda.sh
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matrix:
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python: ['3.9', '3.10', '3.11', '3.12']
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steps:
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- name: Cancel Previous Runs
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uses: styfle/cancel-workflow-action@0.12.1
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with:
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access_token: ${{ github.token }}
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- uses: actions/checkout@v4.2.0
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with:
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fetch-depth: 0
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- uses: conda-incubator/setup-miniconda@v3
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with:
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miniforge-version: latest
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defaults:
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run:
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shell: cmd /C CALL {0}
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strategy:
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matrix:
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python: ['3.9', '3.10', '3.11', '3.12']
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uses: actions/download-artifact@v4
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with:
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name: ${{ env.PACKAGE_NAME }} ${{ runner.os }} Python ${{ matrix.python }}
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- uses: conda-incubator/setup-miniconda@v3
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with:
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miniforge-version: latest
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shell: cmd /C CALL {0}
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run: |
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conda search ${{ env.PACKAGE_NAME }} -c ${{ env.workdir }}/channel --override-channels --info --json > ${{ env.workdir }}\ver.json
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- name: Output content of produced ver.json
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shell: pwsh
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run: Get-Content -Path ${{ env.workdir }}\ver.json
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- name: Collect dependencies
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shell: cmd /C CALL {0}
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run: |
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SET PACKAGE_VERSION=%%F
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)
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conda install -n ${{ env.TEST_ENV_NAME }} ${{ env.PACKAGE_NAME }}=%PACKAGE_VERSION% python=${{ matrix.python }} -c ${{ env.workdir }}/channel ${{ env.CHANNELS }} --only-deps --dry-run > lockfile
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- name: Display lockfile content
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shell: pwsh
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run: Get-Content -Path .\lockfile
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- name: Cache conda packages
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uses: actions/cache@v4
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env:
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restore-keys: |
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${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-python-${{ matrix.python }}-
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${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-
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- name: Install mkl_fft
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shell: cmd /C CALL {0}
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run: |
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)
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SET "TEST_DEPENDENCIES=pytest pytest-cov"
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conda install -n ${{ env.TEST_ENV_NAME }} ${{ env.PACKAGE_NAME }}=%PACKAGE_VERSION% %TEST_DEPENDENCIES% python=${{ matrix.python }} scipy -c ${{ env.workdir }}/channel ${{ env.CHANNELS }}
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- name: Report content of test environment
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shell: cmd /C CALL {0}
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run: |

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