Upgrade pyo3 dependencies

Author: w1th0utnam3

Cargo.lock

@@ -8,15 +8,15 @@ license.workspace = true
 [dependencies]
 splashsurf = { path = "../splashsurf" }
 splashsurf_lib = { path = "../splashsurf_lib" }
-pyo3 = { version = "0.27", features = ["anyhow"] }
-numpy = "0.27"
-ndarray = "0.16.1"
+pyo3 = { version = "0.28", features = ["anyhow"] }
+numpy = "0.28"
+ndarray = "0.17"
 bytemuck = { version = "1.23", features = ["extern_crate_alloc"] }
-anyhow = "1.0.98"
-pyo3-stub-gen = "0.16.1"
+anyhow = "1.0"
+pyo3-stub-gen = "0.19"
 
 [build-dependencies]
-pyo3-build-config = { version = "0.27" , features = ["resolve-config"] }
+pyo3-build-config = { version = "0.28" , features = ["resolve-config"] }
 
 [features]
 extension-module = ["pyo3/extension-module", "pyo3/abi3-py310"]