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add small debugs
1 parent 0c1806f commit cf06557

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src/main/java/net/preibisch/bigstitcher/spark/IntensitySolver.java

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@@ -15,6 +15,7 @@
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import net.preibisch.bigstitcher.spark.abstractcmdline.AbstractSelectableViews;
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import net.preibisch.bigstitcher.spark.util.Import;
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import net.preibisch.bigstitcher.spark.util.N5Util;
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import net.preibisch.bigstitcher.spark.util.ViewUtil;
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import net.preibisch.mvrecon.fiji.spimdata.SpimData2;
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import net.preibisch.mvrecon.process.fusion.intensity.Coefficients;
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import net.preibisch.mvrecon.process.fusion.intensity.IntensityCorrection;
@@ -99,6 +100,8 @@ else if ( outputPathURIString.toLowerCase().endsWith( ".h5" ) || outPathURI.toSt
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final List< ViewPairCoefficientMatches > pairwiseMatches = new ArrayList<>();
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for ( int i = 0; i < views.size(); ++i )
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{
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ViewUtil.progressPercentage(i, views.size());
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for ( int j = i + 1; j < views.size(); ++j )
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{
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final ViewPairCoefficientMatches matches = matchesIO.read( views.get( i ), views.get( j ) );
@@ -107,6 +110,9 @@ else if ( outputPathURIString.toLowerCase().endsWith( ".h5" ) || outPathURI.toSt
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}
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}
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System.out.println( "\nConnected pairs: " + pairwiseMatches.size() );
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System.out.println( "Running solve... " );
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final Map< ViewId, Coefficients > coefficients = IntensityCorrection.solve( coefficientsSize, pairwiseMatches, maxIterations );
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IntensityCorrection.writeCoefficients( n5Writer, outputGroup, outputDataset, coefficients );

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