Simple_VCF_Parser/test.vcf at main · JeremyDavis11/Simple_VCF_Parser · GitHub

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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMPLE1	SAMPLE2	SAMPLE3
chr1	100	.	A	T	55	PASS	DP=40;AF=0.25	GT:DP	0/1:20	0/0:12	0/1:8
chr1	200	.	G	C	28	PASS	DP=18;AF=0.10	GT:DP	0/0:6	0/1:7	0/0:5
chr1	300	.	T	A	60	PASS	DP=55;AF=0.40	GT:DP	0/1:22	0/1:18	0/1:15
chr1	400	.	C	G	15	PASS	DP=8;AF=0.50	GT:DP	1/1:4	0/1:2	./.:2
chr1	500	.	A	G	45	PASS	DP=30;AF=0.33	GT:DP	0/1:10	0/0:11	0/1:9
chr2	100	.	G	A	32	PASS	DP=12;AF=0.15	GT:DP	0/0:4	0/1:5	0/0:3
chr2	200	.	T	C	70	PASS	DP=62;AF=0.45	GT:DP	0/1:25	0/1:20	0/1:17
chr2	300	.	A	T	22	PASS	DP=9;AF=0.20	GT:DP	0/0:3	./.:3	0/1:3
chr2	400	.	C	A	50	PASS	DP=35;AF=0.30	GT:DP	0/1:15	0/0:12	0/1:8
chr2	500	.	G	T	8	PASS	DP=5;AF=0.60	GT:DP	1/1:2	./.:1	1/1:2