diff --git a/conda-environment.yml b/conda-environment.yml
index 34259f455..48c4732b9 100644
--- a/conda-environment.yml
+++ b/conda-environment.yml
@@ -9,15 +9,15 @@ dependencies:
   - _python_rc=1 # Needed on Mac since Python >= 3.12
   - jupyter=1.1.1
   - matplotlib=3.10.8
-  - nbconvert=7.16.6
-  - nbconvert-webpdf=7.16.6
-  - numpy=2.2.5
+  - nbconvert=7.17.1
+  - nbconvert-webpdf=7.17.1
+  - numpy=2.4.4
   - pandas=2.2.3
   - pip=26.0.1
   - setuptools=80.9.0 # opentsne uses sklearn.base uses joblib uses distutils missing in Python >= 12 (TODO use native openTSNE?) 
   - wordcloud=1.9.6
   - monotonic=1.6
-  - plotly=6.5.2
+  - plotly=6.7.0
   - python-kaleido=1.2.0 # To render plotly plots. Static image export for web-based visualization libraries.
   - scikit-learn=1.8.0 # For anomaly detection HDBSCAN clustering, scores like AMI, and others 
   - seaborn=0.13.2 # To visualize clustering results
diff --git a/requirements.txt b/requirements.txt
index eaf0d79be..bc55acd49 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -6,8 +6,8 @@
 # --- Core tools ---
 jupyter==1.1.1
 matplotlib==3.10.8
-nbconvert[webpdf]==7.17.0
-numpy==2.2.5
+nbconvert[webpdf]==7.17.1
+numpy==2.4.4
 pandas==2.3.3
 pip==26.0.1
 setuptools==80.9.0 # opentsne uses sklearn.base uses joblib uses distutils missing in Python >= 12 (TODO use native openTSNE?) 
@@ -15,7 +15,7 @@ setuptools==80.9.0 # opentsne uses sklearn.base uses joblib uses distutils missi
 # --- Visualization ---
 wordcloud==1.9.6
 monotonic==1.6
-plotly[kaleido]==6.5.2
+plotly[kaleido]==6.7.0
 seaborn==0.13.2 # To visualize clustering results
 
 # --- Machine Learning / Optimization ---