Merge branch 'master' into compathelper/new_version/2023-09-16-00-52-07-949-02230791788

Author: simsurace

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"

.github/workflows/CompatHelper.yml

@@ -5,11 +5,30 @@ on:
     - cron: 0 0 * * *
   workflow_dispatch:
 
+permissions:
+  contents: write
+  pull-requests: write
+
 jobs:
   CompatHelper:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - name: Check if Julia is already available in the PATH
+        id: julia_in_path
+        run: which julia
+        continue-on-error: true
+      - name: Install Julia, but only if it is not already available in the PATH
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: '1'
+          arch: ${{ runner.arch }}
+        if: steps.julia_in_path.outcome != 'success'
+      - name: "Add the General registry via Git"
+        run: |
+          import Pkg
+          ENV["JULIA_PKG_SERVER"] = ""
+          Pkg.Registry.add("General")
+        shell: julia --color=yes {0}
       - name: "Install CompatHelper"
         run: |
           import Pkg

.github/workflows/benchmark-comment.yml

@@ -24,7 +24,7 @@ jobs:
       ${{ github.event.workflow_run.event == 'pull_request' &&
           github.event.workflow_run.conclusion == 'success' }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       # restore records from the artifacts
       - uses: dawidd6/action-download-artifact@v2
         with:
@@ -41,7 +41,7 @@ jobs:
           echo ::set-output name=body::$(cat ./pull-request-number.artifact)
       # check if the previous comment exists
       - name: find comment
-        uses: peter-evans/find-comment@v1
+        uses: peter-evans/find-comment@v3
         id: fc
         with:
           issue-number: ${{ steps.output-pull-request-number.outputs.body }}

.github/workflows/benchmark.yml

@@ -16,11 +16,11 @@ jobs:
     if: contains(github.event.pull_request.labels.*.name, 'performance critical')
     steps:
       # setup
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@latest
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v1
         with:
           version: '1.7'
-      - uses: julia-actions/julia-buildpkg@latest
+      - uses: julia-actions/julia-buildpkg@v1
       - name: install dependencies
         run: julia -e 'using Pkg; pkg"add PkgBenchmark BenchmarkCI@0.1"'
       # run the benchmark suite
@@ -47,7 +47,7 @@ jobs:
       - name: record pull request number
         run: echo ${{ github.event.pull_request.number }} > ./pull-request-number.artifact
       # save as artifacts (performance tracking (comment) workflow will use it)
-      - uses: actions/upload-artifact@v2
+      - uses: actions/upload-artifact@v4
         with:
           name: Benchmarking
           path: ./*.artifact

.github/workflows/ci.yml

@@ -35,21 +35,12 @@ jobs:
           - 'MultiOutput'
           - 'Others'
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
+      - uses: julia-actions/cache@v1
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
         with:

.github/workflows/doc_preview_cleanup.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout gh-pages branch
-        uses: actions/checkout@v2
+        uses: actions/checkout@v4
         with:
           ref: gh-pages
       - name: Delete preview and history + push changes

.github/workflows/docs.yml

@@ -17,7 +17,7 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
           version: '1'

.github/workflows/format.yml

@@ -13,8 +13,8 @@ jobs:
   format:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@latest
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v1
         with:
           version: 1
       - run: |

Project.toml

@@ -1,6 +1,6 @@
 name = "KernelFunctions"
 uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392"
-version = "0.10.56"
+version = "0.10.63"
 
 [deps]
 ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
@@ -25,13 +25,14 @@ ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444"
 ChainRulesCore = "1"
 Compat = "3.7, 4"
 CompositionsBase = "0.1"
-Distances = "0.10"
+Distances = "0.10.9"
 FillArrays = "0.10, 0.11, 0.12, 0.13, 1"
 Functors = "0.1, 0.2, 0.3, 0.4"
 IrrationalConstants = "0.1, 0.2"
 LogExpFunctions = "0.2.1, 0.3"
 Requires = "1.0.1"
 SpecialFunctions = "0.8, 0.9, 0.10, 1, 2"
+Statistics = "1"
 StatsBase = "0.32, 0.33, 0.34"
 TensorCore = "0.1"
 ZygoteRules = "0.2"

README.md

@@ -1,6 +1,6 @@
 # KernelFunctions.jl
 
-![CI](https://github.com/JuliaGaussianProcesses/KernelFunctions.jl/workflows/CI/badge.svg?branch=master)
+[![CI](https://github.com/JuliaGaussianProcesses/KernelFunctions.jl/actions/workflows/ci.yml/badge.svg?branch=master)](https://github.com/JuliaGaussianProcesses/KernelFunctions.jl/actions/workflows/ci.yml?query=branch%3Amaster)
 [![codecov](https://codecov.io/gh/JuliaGaussianProcesses/KernelFunctions.jl/branch/master/graph/badge.svg?token=rmDh3gb7hN)](https://codecov.io/gh/JuliaGaussianProcesses/KernelFunctions.jl)
 [![Documentation (stable)](https://img.shields.io/badge/docs-stable-blue.svg)](https://juliagaussianprocesses.github.io/KernelFunctions.jl/stable)
 [![Documentation (latest)](https://img.shields.io/badge/docs-dev-blue.svg)](https://juliagaussianprocesses.github.io/KernelFunctions.jl/dev)