ExportAPI.jl

# the IncrementalInference API


# reexport
export ℝ, AbstractManifold
export Identity, hat , vee, ArrayPartition, exp!, exp, log!, log
# common groups -- preferred defaults at this time.
export TranslationGroup, RealCircleGroup
# common non-groups -- TODO still teething problems to sort out in IIF v0.25-v0.26.
export Euclidean, Circle

# DFG SpecialDefinitions
export AbstractDFG,
  getSolverParams,
  GraphsDFG,
  LocalDFG,
  findShortestPathDijkstra,
  isPathFactorsHomogeneous,
  getSolvedCount,
  isSolved,
  setSolvedCount!,
  listSupersolves,
  listSolveKeys,
  cloneSolveKey!,
  diagm,
  listBlobEntries,
  FolderStore,
  addBlobStore!,
  addData!,
  addBlob!,
  getData,
  DFGVariable,
  DFGVariableSummary,
  DFGFactor,
  DFGFactorSummary,
  deleteVariableSolverData!
# listDataBlobs  # ERROR: LightDFG{} doesn't override 'listDataBlobs'.

# Inference types
export AbstractPackedFactor, AbstractFactor
export AbstractPrior, AbstractRelative
export AbstractRelativeMinimize, AbstractManifoldMinimize

# not sure if this is necessary
export convert, *

export CSMHistory,
  # getTreeCliqsSolverHistories,

  AbstractBayesTree,
  BayesTreeNodeData,
  PackedBayesTreeNodeData,

  # state machine methods
  StateMachine,
  exitStateMachine,
  print,
  getGraphFromHistory,
  getCliqSubgraphFromHistory,
  sandboxStateMachineStep,
  # draw and animate state machine
  getStateLabel,
  histStateMachineTransitions,
  histGraphStateMachineTransitions,
  drawStateTransitionStep,
  drawStateMachineHistory,
  animateStateMachineHistoryByTime,
  animateStateMachineHistoryByTimeCompound,
  animateCliqStateMachines,
  makeCsmMovie,
  areSiblingsRemaingNeedDownOnly,

  # general types for softtyping of variable nodes
  BeliefArray,
  VariableStateType,
  ContinuousScalar,
  SamplableBelief,
  PackedBelief,
  Prior,
  PackedPrior,
  MsgPrior,
  PackedMsgPrior,
  PartialPrior,
  PackedPartialPrior,
  ls2,
  # lsRear,
  # from DFG
  ls,
  lsf,
  listVariables,
  listFactors,
  exists,
  sortDFG,
  getLabel,
  getVariables,
  getVariableOrder,
  getPPE,
  getPPEDict,
  getVariablePPE,
  isVariable,
  isFactor,
  getFactorType,
  getSofttype,
  getVariableType,
  getLogPath,
  joinLogPath,
  lsfPriors,
  isPrior,
  lsTypes,
  lsfTypes,
  findClosestTimestamp,
  printVariable,
  printFactor,
  getTimestamp,
  deepcopyGraph,
  deepcopyGraph!,
  copyGraph!,
  getSolverData,
  getTags,

  # using either dictionary or cloudgraphs
  FunctionNodeData,
  PackedFunctionNodeData, # moved to DFG
  normalfromstring,
  categoricalfromstring,
  # extractdistribution,

  SolverParams,
  getSolvable,
  setSolvable!,
  addVariable!,
  deleteVariable!,
  addFactor!,
  deleteFactor!,
  addMsgFactors!,
  deleteMsgFactors!,
  factorCanInitFromOtherVars,
  doautoinit!,
  initVariable!,
  initVariableManual!,
  resetInitialValues!,
  resetInitValues!,
  # asyncTreeInferUp!,
  # initInferTreeUp!,
  solveCliqWithStateMachine!,
  resetData!,
  resetTreeCliquesForUpSolve!,
  resetFactorGraphNewTree!,
  setVariableInitialized!,
  setVariableInferDim!,
  resetVariable!,
  getFactor,
  getFactorDim,
  getVariableDim,
  getVariable,
  getCliqueData,
  setCliqueData!,
  getManifold,  # new Manifolds.jl based operations
  getVal,
  getBW,
  setVal!,
  getNumPts,
  getBWVal,
  setBW!,
  setBelief!,
  setValKDE!,
  buildCliqSubgraph,

  #
  isPartial,
  isInitialized,
  isTreeSolved,
  isUpInferenceComplete,
  isCliqInitialized,
  isCliqUpSolved,
  areCliqVariablesAllInitialized,
  ensureSolvable!,
  initAll!,
  cycleInitByVarOrder!,
  BayesTree,
  MetaBayesTree,
  TreeBelief,
  LikelihoodMessage,
  initfg,
  buildSubgraph,
  buildCliqSubgraph!,
  transferUpdateSubGraph!,
  getEliminationOrder,
  buildBayesNet!,
  buildTree!,
  buildTreeReset!,
  buildCliquePotentials,
  getCliqDepth,
  getTreeAllFrontalSyms,
  getTreeCliqUpMsgsAll,
  childCliqs,
  getChildren,
  parentCliq,
  getParent,
  getCliqSiblings,
  getNumCliqs,
  getBelief,
  CliqStateMachineContainer,
  solveCliqUp!,
  solveCliqDown!,
  fifoFreeze!,

  #functors need
  preambleCache,
  getSample,
  sampleFactor!,
  sampleFactor,

  #Visualization
  drawGraph,
  drawGraphCliq,
  drawCliqSubgraphUpMocking,
  drawTree,
  drawTreeAsyncLoop,

  # Bayes (Junction) Tree
  evalFactor,
  calcProposalBelief,
  approxConvBelief,
  approxConv,

  # more debugging tools
  localProduct,
  treeProductUp,
  approxCliqMarginalUp!,
  dontMarginalizeVariablesAll!,
  unfreezeVariablesAll!,
  resetVariableAllInitializations!,
  isMarginalized,
  setMarginalized!,
  isMultihypo,
  getMultihypoDistribution,
  getHypothesesVectors,

  # weiged sampling
  AliasingScalarSampler,
  rand!,
  rand,
  fastnorm,

  # Factor operational memory
  CommonConvWrapper,
  CalcFactor,
  getCliqVarInitOrderUp,
  getCliqNumAssocFactorsPerVar,

  # user functions
  propagateBelief,
  getCliqMat,
  getCliqAssocMat,
  getCliqMsgMat,
  getCliqFrontalVarIds,
  getFrontals,
  getCliqSeparatorVarIds,
  getCliqAllVarIds,
  getCliqVarIdsAll,
  getCliqVarIdsPriors,
  getCliqVarSingletons,
  getCliqFactorIdsAll,
  getCliqFactors,
  areCliqVariablesAllMarginalized,

  # generic marginal used during elimitation game
  GenericMarginal,
  PackedGenericMarginal,

  # factor graph operating system utils (fgos)
  saveTree,
  loadTree,

  # Temp placeholder for evaluating string types to real types
  saveDFG,
  loadDFG!,
  loadDFG,
  rebuildFactorCache!,
  getCliqVarSolveOrderUp,
  getFactorsAmongVariablesOnly,
  setfreeze!,

  #internal dev functions for recycling cliques on tree
  attemptTreeSimilarClique,

  # some utils
  compare,
  getMeasurements,
  findFactorsBetweenFrom,
  addDownVariableFactors!,
  getDimension,
  getPointType,
  getPointIdentity,
  setVariableRefence!,
  reshapeVec2Mat

export incrSuffix

export calcPPE, calcVariablePPE
export setPPE!, setVariablePosteriorEstimates!
export getPPEDict
export getPPESuggested, getPPEMean, getPPEMax
export getPPESuggestedAll
export loadDFG
export findVariablesNear, defaultFixedLagOnTree!
export fetchDataJSON

export Position, Position1, Position2, Position3, Position4
export ContinuousScalar, ContinuousEuclid # TODO figure out if this will be deprecated, Caesar.jl #807
export Circular, Circle

# serializing distributions
export packDistribution, unpackDistribution
export PackedCategorical #, PackedDiscreteNonParametric
export PackedUniform, PackedNormal
export PackedZeroMeanDiagNormal,
  PackedZeroMeanFullNormal, PackedDiagNormal, PackedFullNormal
export PackedManifoldKernelDensity
export PackedAliasingScalarSampler
export PackedRayleigh

export Mixture, PackedMixture

export sampleTangent
export samplePoint

export buildCliqSubgraph_StateMachine

export getCliqueStatus, setCliqueStatus!

export stackCliqUpMsgsByVariable, getCliqDownMsgsAfterDownSolve

export resetCliqSolve!
export addLikelihoodsDifferential!
export addLikelihoodsDifferentialCHILD!

export selectFactorType
export approxDeconv, deconvSolveKey
export approxDeconvBelief

export cont2disc
export rebaseFactorVariable!
export accumulateFactorMeans
export solveFactorParametric

export repeatCSMStep!
export attachCSM!
export filterHistAllToArray, cliqHistFilterTransitions, printCliqSummary
export printHistoryLine, printHistoryLane, printCliqHistorySummary
export printCSMHistoryLogical, printCSMHistorySequential

export MetaBayesTree, BayesTree
export CSMHistoryTuple

export getVariableOrder, calcCliquesRecycled
export getCliquePotentials
export getClique, getCliques, getCliqueIds, getCliqueData
export hasClique
export setCliqueDrawColor!, getCliqueDrawColor
export appendSeparatorToClique!

export buildTreeFromOrdering! # TODO make internal and deprecate external use to only `buildTreeReset!``
export makeSolverData!

export MetaPrior


# weakdeps on Interpolations.jl
export HeatmapGridDensity, LevelSetGridNormal
export PackedHeatmapGridDensity, PackedLevelSetGridNormal

# weakdeps on DifferentialEquations.jl
export DERelative

# weakdeps on Flux.jl
export FluxModelsDistribution, PackedFluxModelsDistribution
export MixtureFluxModels

# weakdeps on InteractiveUtils.jl
export getCurrentWorkspaceFactors, getCurrentWorkspaceVariables
export listTypeTree

# weakdeps on Gadfly.jl
export exportimg, spyCliqMat


#