colab-utils

ipynbs in Google Colab for simple bioinfo tasks:

File Manipulation Task	ipy Notebook	Description
fastq.ora decompression		convert fastq.ora to fastq.gz using Illumina GRAGEN

　

Data Retrieving Task	ipy Notebook	Description
Get file meta info from GDC		Use filters to get file IDs and their demographic and diagnostic info, then sampling

Colab is an Ubuntu Container

!lscpu               # View CPU Info
!lsmem               # View Memory Info
!df -h               # View Disk Usage
!cat /etc/os-release # Check Linux Distro

• n1-highmem-2 instance
• 2vCPU @ 2.2GHz
• 13GB RAM
• 100GB Free Space

Bookmarks

Website	Usage
https://openincolab.com/	Make Colab Badge
https://tinypng.com/	Shrink PNG and JPG