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update static data from prod and fix tests
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‎qmra/risk_assessment/tests/test_assess_risk.py‎

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@@ -77,7 +77,7 @@ def test_with_all_pathogens(self):
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) for p, _ in QMRAPathogens.data.items()
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]
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given_treatments = [
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Treatment.from_default(QMRATreatments.get("Conventional clarification"), given_ra),
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Treatment.from_default(QMRATreatments.get("Coagulation, flocculation and media filtration"), given_ra),
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Treatment.from_default(QMRATreatments.get("Slow sand filtration"), given_ra),
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]
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given_ra.inflows.set(given_inflows, bulk=False)

‎qmra/static/data/default-references.json‎

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@@ -1 +1 @@
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{"1": {"ReferenceID": 1, "ReferenceName": "Adams et al. 1976 & Haggerty and John 1978", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Naegleria_fowleri:_Dose_Response_Models"}, "2": {"ReferenceID": 2, "ReferenceName": "Black et al 1988", "ReferenceLink": "https://qmrawiki.org/experiments/campylobacter-jejuni/108%2B%2B"}, "3": {"ReferenceID": 3, "ReferenceName": "Cliver, 1981", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Enteroviruses:_Dose_Response_Models"}, "4": {"ReferenceID": 4, "ReferenceName": "Cornick & Helgerson (2004)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli_enterohemorrhagic_(EHEC):_Dose_Response_Models"}, "5": {"ReferenceID": 5, "ReferenceName": "Couch, Cate et al. 1966", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Adenovirus:_Dose_Response_Models"}, "6": {"ReferenceID": 6, "ReferenceName": "Day and Berendt, 1972", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Francisella_tularensis:_Dose_Response_Models"}, "7": {"ReferenceID": 7, "ReferenceName": "DeDiego et al., 2008 & De Albuquerque et al., 2006", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/SARS:_Dose_Response_Models"}, "8": {"ReferenceID": 8, "ReferenceName": "DEMEAUWARE Deliverable 3.1 (p.18-19): NRMMC-EPHC-AHMC (2006), WHO 2006, Table 3.6)", "ReferenceLink": "https://www.kompetenz-wasser.de/media/pages/forschung/publikationen/843/eb7a40d5d0-1702634140/Seis-2015-843.pdf"}, "9": {"ReferenceID": 9, "ReferenceName": "Druett 1953", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Bacillus_anthracis:_Dose_Response_Models"}, "10": {"ReferenceID": 10, "ReferenceName": "DuPont et al. (1971)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli:_Dose_Response_Models"}, "11": {"ReferenceID": 11, "ReferenceName": "DuPont et al. (1972b)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Shigella:_Dose_Response_Models"}, "12": {"ReferenceID": 12, "ReferenceName": "Golnazarian", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Infection):_Dose_Response_Models"}, "13": {"ReferenceID": 13, "ReferenceName": "Golnazarian, Donnelly et al. 1989", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Death_as_response):_Dose_Response_Models"}, "14": {"ReferenceID": 14, "ReferenceName": "Hazlett, Rosen et al. 1978", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(bacterimia):_Dose_Response_Models"}, "15": {"ReferenceID": 15, "ReferenceName": "Hendley et al., 1972", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Rhinovirus:_Dose_Response_Models"}, "16": {"ReferenceID": 16, "ReferenceName": "Hornick et al. (1966),Hornick et al. (1970)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_Typhi:_Dose_Response_Models"}, "17": {"ReferenceID": 17, "ReferenceName": "Hornick et al., (1971)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Vibrio_cholerae:_Dose_Response_Models"}, "18": {"ReferenceID": 18, "ReferenceName": "Jahrling et al., 1982", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Lassa_virus:_Dose_Response_Models"}, "19": {"ReferenceID": 19, "ReferenceName": "Koprowski", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Poliovirus:_Dose_Response_Models"}, "20": {"ReferenceID": 20, "ReferenceName": "Lathem et al. 2005", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Yersinia_pestis:_Dose_Response_Models"}, "21": {"ReferenceID": 21, "ReferenceName": "Lawin-Brussel et al. (1993)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(Contact_lens):_Dose_Response_Models"}, "22": {"ReferenceID": 22, "ReferenceName": "Liu, Koo et al. 2002 and Brett and Woods 1996", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Burkholderia_pseudomallei:_Dose_Response_Models"}, "23": {"ReferenceID": 23, "ReferenceName": "McCullough and Eisele 1951,2", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_meleagridis:_Dose_Response_Models"}, "24": {"ReferenceID": 24, "ReferenceName": "McCullough and Elsele,1951", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_anatum:_Dose_Response_Models"}, "25": {"ReferenceID": 25, "ReferenceName": "McCullough and Elsele,1951", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_serotype_newport:_Dose_Response_Models"}, "26": {"ReferenceID": 26, "ReferenceName": "Messner et al. 2001", "ReferenceLink": "https://qmrawiki.org/experiments/cryptosporidium-parvum"}, "27": {"ReferenceID": 27, "ReferenceName": "Meynell and Meynell,1958", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_nontyphoid:_Dose_Response_Models"}, "28": {"ReferenceID": 28, "ReferenceName": "Muller et al. (1983)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Legionella_pneumophila:_Dose_Response_Models"}, "29": {"ReferenceID": 29, "ReferenceName": "Murphy et al., 1984 & Murphy et al., 1985", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Influenza:_Dose_Response_Models"}, "30": {"ReferenceID": 30, "ReferenceName": "O'Brien et al(1976)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Mycobacterium_avium:_Dose_Response_Models"}, "31": {"ReferenceID": 31, "ReferenceName": "Rendtorff 1954", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Endamoeba_coli:_Dose_Response_Models"}, "32": {"ReferenceID": 32, "ReferenceName": "Rendtorff 1954", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Giardia_duodenalis:_Dose_Response_Models"}, "33": {"ReferenceID": 33, "ReferenceName": "Rose and Haas 1999", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Staphylococcus_aureus:_Dose_Response_Models"}, "34": {"ReferenceID": 34, "ReferenceName": "Saslaw and Carlisle 1966 and Dupont, Hornick et al. 1973", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Rickettsia_rickettsi:_Dose_Response_Models"}, "35": {"ReferenceID": 35, "ReferenceName": "Schiff et al.,1984", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Echovirus:_Dose_Response_Models"}, "36": {"ReferenceID": 36, "ReferenceName": "Smith, Williams2007", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Stillbirths):_Dose_Response_Models"}, "37": {"ReferenceID": 37, "ReferenceName": "Ward et al, 1986", "ReferenceLink": "https://qmrawiki.org/experiments/rotavirus"}, "38": {"ReferenceID": 38, "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.4", "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=155"}, "39": {"ReferenceID": 39, "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.6", "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"}, "40": {"ReferenceID": 40, "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7", "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"}, "41": {"ReferenceID": 41, "ReferenceName": "Williams et al, 1982", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Coxiella_burnetii:_Dose_Response_Models"}, "42": {"ReferenceID": 42, "ReferenceName": "WHO (2006) safe use wastewater V2", "ReferenceLink": "https://www.who.int/publications/i/item/9241546832"}, "43": {"ReferenceID": 43, "ReferenceName": "WHO GDWQ (2004)", "ReferenceLink": "https://www.who.int/publications/i/item/9789241549950"}, "44": {"ReferenceID": 44, "ReferenceName": "KWR 2016.081", "ReferenceLink": "https://library.kwrwater.nl/publication/54026237/"}, "45": {"ReferenceID": 45, "ReferenceName": "Sales Ortells 2015", "ReferenceLink": "https://repository.tudelft.nl/islandora/object/uuid:0e41d07b-9f44-4220-aaac-e22c73c5074a?collection=research"}, "46": {"ReferenceID": 46, "ReferenceName": "MICRORISK final report chapter 4 Table 4.11", "ReferenceLink": "https://www.kwrwater.nl/wp-content/uploads/2016/09/MICRORISK-FINAL-REPORT-Quantitative-microbial-risk-assessment-in-the-Water-Safety-Plan.pdf"}, "47": {"ReferenceID": 47, "ReferenceName": "NSF/ANSI 419 validation", "ReferenceLink": "http://info.nsf.org/Certified/pdwe/Listings.asp"}, "48": {"ReferenceID": 48, "ReferenceName": "EPHC, NRMMC, AHMC (2006)", "ReferenceLink": "https://www.susana.org/en/knowledge-hub/resources-and-publications/library/details/1533"}, "49": {"ReferenceID": 49, "ReferenceName": "WHO 2017", "ReferenceLink": "https://www.who.int/water_sanitation_health/publications/drinking-water-quality-guidelines-4-including-1st-addendum/en/"}, "50": {"ReferenceID": 50, "ReferenceName": "Hijnen et al. (2006)", "ReferenceLink": "https://doi.org/10.1016/j.watres.2005.10.030"}}
1+
{"1": {"ReferenceID": 1, "ReferenceName": "Adams et al. 1976 & Haggerty and John 1978", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Naegleria_fowleri:_Dose_Response_Models"}, "2": {"ReferenceID": 2, "ReferenceName": "Black et al 1988", "ReferenceLink": "https://qmrawiki.org/experiments/campylobacter-jejuni/108%2B%2B"}, "3": {"ReferenceID": 3, "ReferenceName": "Cliver, 1981", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Enteroviruses:_Dose_Response_Models"}, "4": {"ReferenceID": 4, "ReferenceName": "Cornick & Helgerson (2004)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli_enterohemorrhagic_(EHEC):_Dose_Response_Models"}, "5": {"ReferenceID": 5, "ReferenceName": "Couch, Cate et al. 1966", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Adenovirus:_Dose_Response_Models"}, "6": {"ReferenceID": 6, "ReferenceName": "Day and Berendt, 1972", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Francisella_tularensis:_Dose_Response_Models"}, "7": {"ReferenceID": 7, "ReferenceName": "DeDiego et al., 2008 & De Albuquerque et al., 2006", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/SARS:_Dose_Response_Models"}, "8": {"ReferenceID": 8, "ReferenceName": "DEMEAUWARE Deliverable 3.1 (p.18-19): NRMMC-EPHC-AHMC (2006), WHO 2006, Table 3.6)", "ReferenceLink": "https://www.kompetenz-wasser.de/media/pages/forschung/publikationen/843/eb7a40d5d0-1702634140/Seis-2015-843.pdf"}, "9": {"ReferenceID": 9, "ReferenceName": "Druett 1953", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Bacillus_anthracis:_Dose_Response_Models"}, "10": {"ReferenceID": 10, "ReferenceName": "DuPont et al. (1971)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli:_Dose_Response_Models"}, "11": {"ReferenceID": 11, "ReferenceName": "DuPont et al. (1972b)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Shigella:_Dose_Response_Models"}, "12": {"ReferenceID": 12, "ReferenceName": "Golnazarian", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Infection):_Dose_Response_Models"}, "13": {"ReferenceID": 13, "ReferenceName": "Golnazarian, Donnelly et al. 1989", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Death_as_response):_Dose_Response_Models"}, "14": {"ReferenceID": 14, "ReferenceName": "Hazlett, Rosen et al. 1978", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(bacterimia):_Dose_Response_Models"}, "15": {"ReferenceID": 15, "ReferenceName": "Hendley et al., 1972", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Rhinovirus:_Dose_Response_Models"}, "16": {"ReferenceID": 16, "ReferenceName": "Hornick et al. (1966),Hornick et al. (1970)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_Typhi:_Dose_Response_Models"}, "17": {"ReferenceID": 17, "ReferenceName": "Hornick et al., (1971)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Vibrio_cholerae:_Dose_Response_Models"}, "18": {"ReferenceID": 18, "ReferenceName": "Jahrling et al., 1982", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Lassa_virus:_Dose_Response_Models"}, "19": {"ReferenceID": 19, "ReferenceName": "Koprowski", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Poliovirus:_Dose_Response_Models"}, "20": {"ReferenceID": 20, "ReferenceName": "Lathem et al. 2005", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Yersinia_pestis:_Dose_Response_Models"}, "21": {"ReferenceID": 21, "ReferenceName": "Lawin-Brussel et al. (1993)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(Contact_lens):_Dose_Response_Models"}, "22": {"ReferenceID": 22, "ReferenceName": "Liu, Koo et al. 2002 and Brett and Woods 1996", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Burkholderia_pseudomallei:_Dose_Response_Models"}, "23": {"ReferenceID": 23, "ReferenceName": "McCullough and Eisele 1951,2", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_meleagridis:_Dose_Response_Models"}, "24": {"ReferenceID": 24, "ReferenceName": "McCullough and Elsele,1951", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_anatum:_Dose_Response_Models"}, "25": {"ReferenceID": 25, "ReferenceName": "McCullough and Elsele,1951", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_serotype_newport:_Dose_Response_Models"}, "26": {"ReferenceID": 26, "ReferenceName": "Messner et al. 2001", "ReferenceLink": "https://qmrawiki.org/experiments/cryptosporidium-parvum"}, "27": {"ReferenceID": 27, "ReferenceName": "Meynell and Meynell,1958", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_nontyphoid:_Dose_Response_Models"}, "28": {"ReferenceID": 28, "ReferenceName": "Muller et al. (1983)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Legionella_pneumophila:_Dose_Response_Models"}, "29": {"ReferenceID": 29, "ReferenceName": "Murphy et al., 1984 & Murphy et al., 1985", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Influenza:_Dose_Response_Models"}, "30": {"ReferenceID": 30, "ReferenceName": "O'Brien et al(1976)", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Mycobacterium_avium:_Dose_Response_Models"}, "31": {"ReferenceID": 31, "ReferenceName": "Rendtorff 1954", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Endamoeba_coli:_Dose_Response_Models"}, "32": {"ReferenceID": 32, "ReferenceName": "Rendtorff 1954", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Giardia_duodenalis:_Dose_Response_Models"}, "33": {"ReferenceID": 33, "ReferenceName": "Rose and Haas 1999", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Staphylococcus_aureus:_Dose_Response_Models"}, "34": {"ReferenceID": 34, "ReferenceName": "Saslaw and Carlisle 1966 and Dupont, Hornick et al. 1973", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Rickettsia_rickettsi:_Dose_Response_Models"}, "35": {"ReferenceID": 35, "ReferenceName": "Schiff et al.,1984", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Echovirus:_Dose_Response_Models"}, "36": {"ReferenceID": 36, "ReferenceName": "Smith, Williams2007", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Stillbirths):_Dose_Response_Models"}, "37": {"ReferenceID": 37, "ReferenceName": "Ward et al, 1986", "ReferenceLink": "https://qmrawiki.org/experiments/rotavirus"}, "38": {"ReferenceID": 38, "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.4", "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=155"}, "39": {"ReferenceID": 39, "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.6", "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"}, "40": {"ReferenceID": 40, "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7", "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"}, "41": {"ReferenceID": 41, "ReferenceName": "Williams et al, 1982", "ReferenceLink": "http://qmrawiki.canr.msu.edu/index.php/Coxiella_burnetii:_Dose_Response_Models"}, "42": {"ReferenceID": 42, "ReferenceName": "WHO (2006) safe use wastewater V2", "ReferenceLink": "https://www.who.int/publications/i/item/9241546832"}, "43": {"ReferenceID": 43, "ReferenceName": "WHO GDWQ (2004)", "ReferenceLink": "https://www.who.int/publications/i/item/9789241549950"}, "44": {"ReferenceID": 44, "ReferenceName": "KWR 2016.081", "ReferenceLink": "https://library.kwrwater.nl/publication/54026237/"}, "45": {"ReferenceID": 45, "ReferenceName": "Sales Ortells 2015", "ReferenceLink": "https://repository.tudelft.nl/islandora/object/uuid:0e41d07b-9f44-4220-aaac-e22c73c5074a?collection=research"}, "46": {"ReferenceID": 46, "ReferenceName": "MICRORISK final report chapter 4 Table 4.11", "ReferenceLink": "https://www.kwrwater.nl/wp-content/uploads/2016/09/MICRORISK-FINAL-REPORT-Quantitative-microbial-risk-assessment-in-the-Water-Safety-Plan.pdf"}, "47": {"ReferenceID": 47, "ReferenceName": "NSF/ANSI 419 validation", "ReferenceLink": "http://info.nsf.org/Certified/pdwe/Listings.asp"}, "48": {"ReferenceID": 48, "ReferenceName": "EPHC, NRMMC, AHMC (2006)", "ReferenceLink": "https://www.susana.org/en/knowledge-hub/resources-and-publications/library/details/1533"}, "49": {"ReferenceID": 49, "ReferenceName": "WHO 2017", "ReferenceLink": "https://www.who.int/water_sanitation_health/publications/drinking-water-quality-guidelines-4-including-1st-addendum/en/"}, "50": {"ReferenceID": 50, "ReferenceName": "Hijnen et al. (2006)", "ReferenceLink": "https://doi.org/10.1016/j.watres.2005.10.030"}, "51": {"ReferenceID": 51, "ReferenceName": "Australian Guidelines for Water Recycling: Managing Health and Environmental Risks. 2020 Draft of Chapters 1, 2, 3 and 5 and Appendices 2 and 3", "ReferenceLink": "https://qldwater.com.au/public/Australian%20Guidelines%20for%20Water%20Recycling%20Consultation%20Draft%20Revised.docx"}, "52": {"ReferenceID": 52, "ReferenceName": "FlexTreat Abschlussbericht", "ReferenceLink": "https://kompetenz-wasser.de/media/pages/forschung/publikationen/flexible-und-zuverlaessige-konzepte-fuer-eine-nachhaltige-wasserwieder-verwendung-in-der-landwirtschaft-abschlussbericht/8e2b0750bd-1751274868/20250429_flextreat_abschlussbericht.pdf"}, "53": {"ReferenceID": 53, "ReferenceName": "Pecson et al., 2017", "ReferenceLink": "https://www.sciencedirect.com/science/article/pii/S0043135417304888"}}

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