Merge branch 'main' into stephwon-patch-2

Author: stephwon

joss/paper.md

@@ -113,7 +113,7 @@ We present the three use case examples to demonstrate the application of YACHT f
 
 **Metagenomic-assembled genome (MAG) fishing:** Using a single MAG as a training reference database, YACHT searches for specific MAGs within a sample. Applied to two skin metagenomic samples, results shows that detection is sensitive to sequencing depth, coverage, and parameter choice. See [MAG fishing](https://github.com/KoslickiLab/YACHT/tree/main/use_case_examples/MAG_fishing).
 
-**Synthetic metagenomes:** YACHT verifies the presence of designed microbes in mock microbial communities. Higher ANI thresholds recover expected genomes while lower thresholds introduce false positives, demonstrating how ANI and minimum coverage parameters affect sensitivy and specificity. See [Synthetic metagenomes](https://github.com/KoslickiLab/YACHT/tree/main/use_case_examples/synthetic_metagenome)
+**Synthetic metagenomes:** YACHT verifies the presence of designed microbes in mock microbial communities. Higher ANI thresholds recover expected genomes while lower thresholds introduce false positives, demonstrating how ANI and minimum coverage parameters affect sensitivity and specificity. See [Synthetic metagenomes](https://github.com/KoslickiLab/YACHT/tree/main/use_case_examples/synthetic_metagenome)
 
 # Acknowledgements
 We thank the contributors and collaborators who supported the development of YACHT. This work was supported in part by the National Institutes of Health (NIH) under grant number 5R01GM146462-03.