-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathscript4_bedgraph.sh
More file actions
executable file
·20 lines (13 loc) · 1.14 KB
/
script4_bedgraph.sh
File metadata and controls
executable file
·20 lines (13 loc) · 1.14 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
#!/bin/bash
genomeCoverageBed -ibam ZT02_r1_rmdup_filter.bam -bg -trackline > ZT02_r1_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT02_r2_rmdup_filter.bam -bg -trackline > ZT02_r2_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT06_r1_rmdup_filter.bam -bg -trackline > ZT06_r1_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT06_r2_rmdup_filter.bam -bg -trackline > ZT06_r2_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT10_r1_rmdup_filter.bam -bg -trackline > ZT10_r1_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT10_r2_rmdup_filter.bam -bg -trackline > ZT10_r2_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT14_r1_rmdup_filter.bam -bg -trackline > ZT14_r1_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT14_r2_rmdup_filter.bam -bg -trackline > ZT14_r2_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT18_r1_rmdup_filter.bam -bg -trackline > ZT18_r1_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT18_r2_rmdup_filter.bam -bg -trackline > ZT18_r2_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT22_r1_rmdup_filter.bam -bg -trackline > ZT22_r1_rmdup_filter.bedgraph
genomeCoverageBed -ibam ZT22_r2_rmdup_filter.bam -bg -trackline > ZT22_r2_rmdup_filter.bedgraph