Merge pull request #181 from LSSTDESC/issue/180/descwl-shear-sims

add descwl-shear-sims kernel

Author: heather999

jupyter-kernels/descwl-shear-sims/kernel.json

@@ -0,0 +1,11 @@
+{
+  "argv": [
+    "shifter",
+    "--image=lsstdesc/descwl-shear-sims:weekly-latest",
+    "/global/common/software/lsst/common/miniconda/kernels/descwl-shear-sims.sh",
+    "-f",
+    "{connection_file}"
+  ],
+  "display_name": "descwl-shear-sims",
+  "language": "python"
+}

jupyter-kernels/setup/descwl-shear-sims.sh

@@ -0,0 +1,44 @@
+#!/bin/bash
+
+source /opt/lsst/software/stack/loadLSST.bash ""
+setup lsst_distrib
+
+
+export OMP_NUM_THREADS=1
+
+unset PYTHONSTARTUP
+
+export PYTHONNOUSERSITE=' '
+
+export DESC_GCR_SITE='nersc'
+
+export RUBIN_SIM_DATA_DIR=/global/cfs/cdirs/lsst/groups/CO/rubin_sim
+
+if [ -n "$DESCPYTHONPATH" ]; then
+    export PYTHONPATH="$DESCPYTHONPATH:$PYTHONPATH"
+    echo "Including DESCPYTHONPATH: $DESCPYTHONPATH"
+    echo "Wondering Why? DESCPYTHONPATH is likely set in your $HOME/.basrhc, $HOME/.bashrc.ext, or similar config script"
+fi
+
+
+python_ver_major=$(python -c 'import sys; print(sys.version_info.major)')
+python_ver_minor=$(python -c 'import sys; print(sys.version_info.minor)')
+export DESCPYTHONVER="python$python_ver_major.$python_ver_minor"
+
+#export PYTHONPATH=$PYTHONPATH:$LSST_INST_DIR/$LSST_PYTHON_VER
+
+if [ -n "$DESCWLSHEARSIMSUSERBASE" ]; then
+    export PYTHONUSERBASE=$DESCWLSHEARSIMSUSERBASE
+    unset PYTHONUSERSITE
+    unset PYTHONNOUSERSITE
+    export PATH=$PYTHONUSERBASE/bin:$PATH       
+    export PYTHONPATH="$PYTHONUSERBASE/lib/$DESCPYTHONVER/site-packages:$PYTHONPATH"
+    echo "using DESCWLSHEARSIMSUSERBASE: $DESCWLSHEARSIMSUSERBASE"
+fi
+
+
+export PYTHONPATH=".:$PYTHONPATH"
+
+if [ $# -gt 0 ] ; then
+    exec python -m ipykernel $@
+fi

jupyter-kernels/setup/stack-weekly.sh

@@ -2,8 +2,6 @@
 
 source /opt/lsst/software/stack/loadLSST.bash ""
 setup lsst_distrib
-[ -d "$LSST_HOME/obs_lsst" ] && setup -r $LSST_HOME/obs_lsst
-[ -d "$LSST_HOME/supreme" ] && setup -r $LSST_HOME/supreme -j
 
 export OMP_NUM_THREADS=1
 
@@ -31,11 +29,12 @@ python_ver_major=$(python -c 'import sys; print(sys.version_info.major)')
 python_ver_minor=$(python -c 'import sys; print(sys.version_info.minor)')
 export DESCPYTHONVER="python$python_ver_major.$python_ver_minor"
 
-export PYTHONPATH=$PYTHONPATH:$LSST_INST_DIR/$LSST_PYTHON_VER
+#export PYTHONPATH=$PYTHONPATH:$LSST_INST_DIR/$LSST_PYTHON_VER
 
 if [ -n "$DESCSTACKUSERBASE" ]; then
     export PYTHONUSERBASE=$DESCSTACKUSERBASE
     unset PYTHONUSERSITE
+    unset PYTHONNOUSERSITE
     export PATH=$PYTHONUSERBASE/bin:$PATH       
     export PYTHONPATH="$PYTHONUSERBASE/lib/$DESCPYTHONVER/site-packages:$PYTHONPATH"
     echo "using DESCSTACKUSERBASE: $DESCSTACKUSERBASE"

jupyter-kernels/setup/user_setup.sh

@@ -31,6 +31,7 @@ jupyter kernelspec install $INST_DIR/kernels/desc-td-env-dev --user
 jupyter kernelspec install $INST_DIR/kernels/desc-forecasts-dev --user
 jupyter kernelspec install $INST_DIR/kernels/desc-cosmology-dev --user
 jupyter kernelspec install $INST_DIR/kernels/desc-cosmology --user
+jupyter kernelspec install $INST_DIR/kernels/descwl-shear-sims --user
 #echo "Your JupyterLab URL is: "
 #echo "https://jupyter.nersc.gov/user/$USER/cori-shared-node-cpu/lab/tree/$HOME"
 echo "DESC Kernels Now Available"