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_site/assets/css/custom.css

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/* Keep sidebar open */
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#sideBar {
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margin-left: 0 !important;
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left: 0 !important;
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position: fixed !important;
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width: 300px !important;
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background: white !important;
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border-right: 2px solid red !important;
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z-index: 99999 !important;
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}
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/* Hide the + button */
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#demo {
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display: none !important;
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}
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/* Hide the dark overlay */
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#sideBarOverlay {
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display: none !important;
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}

_site/atom.xml

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<generator uri="https://dieghernan.github.io/chulapa" version="1.0.0">Chulapa</generator>
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<link href="https://microbiomehelper.ca/atom.xml" rel="self" type="application/atom+xml" />
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<link href="https://microbiomehelper.ca/" rel="alternate" type="text/html" />
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<updated>2026-06-29T11:06:00-03:00</updated>
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<updated>2026-06-29T11:57:04-03:00</updated>
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<id>https://microbiomehelper.ca/atom.xml</id>
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<title>Microbiome Helper</title>
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_site/docs/marker-gene/index.html

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_site/docs/metagenome-function/index.html

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_site/docs/metagenome-initial/index.html

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_site/docs/metagenome-taxonomy/index.html

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_site/docs/metagenome/index.html

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<!doctype html> <html lang="en-US"><head> <meta charset="utf-8"> <!-- Chulapa Jekyll Theme - v2.0.1.0001 --> <!-- MIT License--> <!-- Docs: https://dieghernan.github.io/chulapa --> <!-- Repo: https://github.com/dieghernan/chulapa --> <!-- Page build 2026-06-29 --> <!-- Jekyll Version 3.10.0 --> <!--Google Structured Data--> <script type="application/ld+json"> { "@context": "https://schema.org", "@type": "Article", "mainEntityOfPage": { "@type": "WebPage", "@id": "https://microbiomehelper.ca/docs/metagenome/" }, "headline": "Metagenome", "image": "https://github.com/LangilleLab.png", "datePublished": "2026-06-29T11:06:00-03:00", "dateModified": "2026-06-29T11:06:00-03:00", "author": { "@type": "Person", "name": "LangilleLab" }, "publisher": { "@type": "Organization", "name": "LangilleLab", "url": "https://microbiomehelper.ca/", "logo": { "@type": "ImageObject", "url": "https://github.com/LangilleLab.png" } } } </script> <script type="application/ld+json"> { "@context": "https://schema.org", "@type": "BreadcrumbList", "itemListElement": [{ "@type": "ListItem", "position": 1, "name": "Microbiome Helper", "item": "https://microbiomehelper.ca/" },{ "@type": "ListItem", "position": 2, "name": "Metagenome" }] } </script> <script type="application/ld+json"> { "@context": "http://schema.org", "@type": "WebPage", "name": "Metagenome", "description": "This page will contain more, but for now:" } } </script><script type="application/ld+json"> { "@context" : "https://schema.org", "@type" : "Person", "description": "Publisher", "name" : "LangilleLab", "url" : "https://microbiomehelper.ca/" } </script> <title>Metagenome | Microbiome Helper</title> <link rel="canonical" href="https://microbiomehelper.ca/docs/metagenome/"> <!-- Atom feed --> <link href="https://microbiomehelper.ca/atom.xml" type="application/atom+xml" rel="alternate" title="Atom feed Microbiome Helper" > <!-- RSS 2.0 feed --> <link href="https://microbiomehelper.ca/rss.xml" type="application/rss+xml" rel="alternate" title="RSS 2.0 feed Microbiome Helper" > <!-- Meta tags --> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta name="author" content="LangilleLab" > <meta name="copyright" content="LangilleLab" > <meta name="description" content="This page will contain more, but for now:"> <meta name="thumbnail" content="https://github.com/LangilleLab.png" > <meta name="robots" content="index, follow"><meta name="keywords" content=""> <!-- OpenGraph --> <meta property="og:title" content="Metagenome | Microbiome Helper" > <meta property="og:site_name" content="Microbiome Helper | " > <meta property="og:url" content="https://microbiomehelper.ca/docs/metagenome/" > <meta property="og:type" content="website" > <meta property="og:description" content="This page will contain more, but for now:" > <meta property="og:locale" content="en-US" > <meta property="og:image" content="https://github.com/LangilleLab.png" > <!-- Twitter/X Cards --> <meta name="twitter:card" content="summary_large_image"><!-- start custom head snippets --> <!-- this script is inserted before the css stylesheet --> <!-- end custom head snippets --> <!-- CSS --> <!-- Preconnect with Google Fonts --> <link rel="preconnect" href="https://fonts.googleapis.com"> <link rel="preconnect" href="https://fonts.gstatic.com" crossorigin> <!-- Fontawesome--> <!-- v6 --> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/@fortawesome/fontawesome-free@6/css/all.min.css"> <link rel="preload" href="https://cdn.jsdelivr.net/gh/dieghernan/chulapa@master/assets/js/chulapa_script.js" as="script" > <link rel="preload" href="https://cdn.jsdelivr.net/gh/dieghernan/chulapa@master/assets/fonts/Chulapa/Chulapa-Bold_vmod.otf" as="font" type="font/otf" crossorigin> <!-- Theme css (Bootstrap included) --> <link rel="stylesheet" id="maincss" href="https://microbiomehelper.ca/assets/css/main.css" > <!-- Highlighter --> <link id="csshigh" rel="stylesheet" href="https://microbiomehelper.ca/assets/css/highlighter.css" > <!-- Custom css --> <link rel="stylesheet" href="https://microbiomehelper.ca/assets/css/custom.css" > <!-- start custom head snippets --> <!-- insert favicons. use https://realfavicongenerator.net/ --> <!-- this script is inserted after the css stylesheet --> <!-- end custom head snippets --> </head> <body class="d-flex flex-column h-entry" id="body"> <a class="u-url d-none" href="https://microbiomehelper.ca/docs/metagenome/">Invisible link to canonical for Microformats</a> <nav class="navbar navbar-expand-md sticky-top navbar-chulapa" aria-label="primary-navigation"> <div class="container-fluid mx-md-2"> <a class="navbar-brand font-weight-bold" href="https://microbiomehelper.ca/"></a><button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarToggler" aria-controls="navbarToggler" aria-expanded="false" aria-label="Toggle navigation"> <span class="navbar-toggler-icon"></span> </button> <div class="collapse navbar-collapse" id="navbarToggler"> <ul class="navbar-nav ml-auto"><li class="nav-item"> <a class="nav-link " href="https://microbiomehelper.ca/">Home</a> </li><li class="nav-item"> <a class="nav-link " href="https://microbiomehelper.ca/docs/marker-gene/">Marker gene</a> </li><li class="nav-item"> <a class="nav-link active font-weight-bold" href="https://microbiomehelper.ca/docs/metagenome/">Metagenome<span class="sr-only">(current)</span></a> </li></ul> </div></div> </nav> <header class="text-center header-chulapa"><div class="container-lg mt-2"> <div class="row"> <div class="col-lg-8 offset-lg-2"> <h1 class="p-name">Metagenome</h1> <hr class="mb-0"> </div> </div> </div> </header> <main class="container-lg pb-3 flex-fill"> <div class="row pt-2"> <aside class="col-lg-2 mt-lg-3 small"></aside> <article id="maincontent" class="col-lg-8 mt-3 e-content"> <p>This page will contain more, but for now:</p> <h4 id="metagenome-initial-steps"><a href="/docs/metagenome-initial/">Metagenome initial steps</a></h4> <h4 id="metagenome-taxonomic-annotation"><a href="/docs/metagenome-taxonomy/">Metagenome taxonomic annotation</a></h4> <h4 id="metagenome-functional-annotation"><a href="/docs/metagenome-function/">Metagenome functional annotation</a></h4> </article> </div> </main><!-- Footer --> <footer class="footer-chulapa text-center mt-0 pt-3"> <div class="container"> <div class="row"> <div class="col-xl-10 offset-xl-1"><p class="mt-2 mb-3">&copy; 2026 LangilleLab</p> <!-- Do not remove this in order to give attributions --> <p class="chulapa-footer-brand">Powered by <a href="https://dieghernan.github.io/chulapa"> <span class="chulapa">Chulapa</span> Jekyll Theme</a><br><b>Focal</b> skin by <a href="https://github.com/dieghernan">dieghernan</a></p> <!-- End attributions --> </div> </div> </div> </footer> <!-- Footer --> <!-- JS, Popper.js, and jQuery --> <script src="https://code.jquery.com/jquery-3.5.1.slim.min.js" integrity="sha384-DfXdz2htPH0lsSSs5nCTpuj/zy4C+OGpamoFVy38MVBnE+IbbVYUew+OrCXaRkfj" crossorigin="anonymous"></script> <script src="https://cdn.jsdelivr.net/npm/popper.js@1.16.0/dist/umd/popper.min.js" integrity="sha384-Q6E9RHvbIyZFJoft+2mJbHaEWldlvI9IOYy5n3zV9zzTtmI3UksdQRVvoxMfooAo" crossorigin="anonymous"></script> <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.5.0/js/bootstrap.min.js" integrity="sha384-OgVRvuATP1z7JjHLkuOU7Xw704+h835Lr+6QL9UvYjZE3Ipu6Tp75j7Bh/kR0JKI" crossorigin="anonymous"></script> <script src="https://cdn.jsdelivr.net/gh/dieghernan/chulapa@master/assets/js/chulapa_script.js"></script> <!-- start custom scripts to be placed at the bottom of the page --> <!-- end custom bottom scripts --> </body> </html>
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<!doctype html> <html lang="en-US"><head> <meta charset="utf-8"> <!-- Chulapa Jekyll Theme - v2.0.1.0001 --> <!-- MIT License--> <!-- Docs: https://dieghernan.github.io/chulapa --> <!-- Repo: https://github.com/dieghernan/chulapa --> <!-- Page build 2026-06-29 --> <!-- Jekyll Version 3.10.0 --> <!--Google Structured Data--> <script type="application/ld+json"> { "@context": "https://schema.org", "@type": "Article", "mainEntityOfPage": { "@type": "WebPage", "@id": "https://microbiomehelper.ca/docs/metagenome/" }, "headline": "Metagenome", "image": "https://github.com/LangilleLab.png", "datePublished": "2026-06-29T11:57:04-03:00", "dateModified": "2026-06-29T11:57:04-03:00", "author": { "@type": "Person", "name": "LangilleLab" }, "publisher": { "@type": "Organization", "name": "LangilleLab", "url": "https://microbiomehelper.ca/", "logo": { "@type": "ImageObject", "url": "https://github.com/LangilleLab.png" } } } </script> <script type="application/ld+json"> { "@context": "https://schema.org", "@type": "BreadcrumbList", "itemListElement": [{ "@type": "ListItem", "position": 1, "name": "Microbiome Helper", "item": "https://microbiomehelper.ca/" },{ "@type": "ListItem", "position": 2, "name": "Metagenome" }] } </script> <script type="application/ld+json"> { "@context": "http://schema.org", "@type": "WebPage", "name": "Metagenome", "description": "This page will contain more, but for now:" } } </script><script type="application/ld+json"> { "@context" : "https://schema.org", "@type" : "Person", "description": "Publisher", "name" : "LangilleLab", "url" : "https://microbiomehelper.ca/" } </script> <title>Metagenome | Microbiome Helper</title> <link rel="canonical" href="https://microbiomehelper.ca/docs/metagenome/"> <!-- Atom feed --> <link href="https://microbiomehelper.ca/atom.xml" type="application/atom+xml" rel="alternate" title="Atom feed Microbiome Helper" > <!-- RSS 2.0 feed --> <link href="https://microbiomehelper.ca/rss.xml" type="application/rss+xml" rel="alternate" title="RSS 2.0 feed Microbiome Helper" > <!-- Meta tags --> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta name="author" content="LangilleLab" > <meta name="copyright" content="LangilleLab" > <meta name="description" content="This page will contain more, but for now:"> <meta name="thumbnail" content="https://github.com/LangilleLab.png" > <meta name="robots" content="index, follow"><meta name="keywords" content=""> <!-- OpenGraph --> <meta property="og:title" content="Metagenome | Microbiome Helper" > <meta property="og:site_name" content="Microbiome Helper | " > <meta property="og:url" content="https://microbiomehelper.ca/docs/metagenome/" > <meta property="og:type" content="website" > <meta property="og:description" content="This page will contain more, but for now:" > <meta property="og:locale" content="en-US" > <meta property="og:image" content="https://github.com/LangilleLab.png" > <!-- Twitter/X Cards --> <meta name="twitter:card" content="summary_large_image"><!-- start custom head snippets --> <!-- this script is inserted before the css stylesheet --> <!-- end custom head snippets --> <!-- CSS --> <!-- Preconnect with Google Fonts --> <link rel="preconnect" href="https://fonts.googleapis.com"> <link rel="preconnect" href="https://fonts.gstatic.com" crossorigin> <!-- Fontawesome--> <!-- v6 --> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/@fortawesome/fontawesome-free@6/css/all.min.css"> <link rel="preload" href="https://cdn.jsdelivr.net/gh/dieghernan/chulapa@master/assets/js/chulapa_script.js" as="script" > <link rel="preload" href="https://cdn.jsdelivr.net/gh/dieghernan/chulapa@master/assets/fonts/Chulapa/Chulapa-Bold_vmod.otf" as="font" type="font/otf" crossorigin> <!-- Theme css (Bootstrap included) --> <link rel="stylesheet" id="maincss" href="https://microbiomehelper.ca/assets/css/main.css" > <!-- Highlighter --> <link id="csshigh" rel="stylesheet" href="https://microbiomehelper.ca/assets/css/highlighter.css" > <!-- Custom css --> <link rel="stylesheet" href="https://microbiomehelper.ca/assets/css/custom.css" > <!-- start custom head snippets --> <!-- insert favicons. use https://realfavicongenerator.net/ --> <!-- this script is inserted after the css stylesheet --> <!-- end custom head snippets --> </head> <body class="d-flex flex-column h-entry" id="body"> <a class="u-url d-none" href="https://microbiomehelper.ca/docs/metagenome/">Invisible link to canonical for Microformats</a> <nav class="navbar navbar-expand-md sticky-top navbar-chulapa" aria-label="primary-navigation"> <div class="container-fluid mx-md-2"> <a class="navbar-brand font-weight-bold" href="https://microbiomehelper.ca/"></a><button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarToggler" aria-controls="navbarToggler" aria-expanded="false" aria-label="Toggle navigation"> <span class="navbar-toggler-icon"></span> </button> <div class="collapse navbar-collapse" id="navbarToggler"> <ul class="navbar-nav ml-auto"><li class="nav-item"> <a class="nav-link " href="https://microbiomehelper.ca/">Home</a> </li><li class="nav-item"> <a class="nav-link " href="https://microbiomehelper.ca/docs/marker-gene/">Marker gene</a> </li><li class="nav-item"> <a class="nav-link active font-weight-bold" href="https://microbiomehelper.ca/docs/metagenome/">Metagenome<span class="sr-only">(current)</span></a> </li></ul> </div></div> </nav> <header class="text-center header-chulapa"><div class="container-lg mt-2"> <div class="row"> <div class="col-lg-8 offset-lg-2"> <h1 class="p-name">Metagenome</h1> <hr class="mb-0"> </div> </div> </div> </header> <main class="container-lg pb-3 flex-fill"> <div class="row pt-2"> <aside class="col-lg-2 mt-lg-3 small"></aside> <article id="maincontent" class="col-lg-8 mt-3 e-content"> <p>This page will contain more, but for now:</p> <h4 id="metagenome-initial-steps"><a href="/docs/metagenome-initial/">Metagenome initial steps</a></h4> <h4 id="metagenome-taxonomic-annotation"><a href="/docs/metagenome-taxonomy/">Metagenome taxonomic annotation</a></h4> <h4 id="metagenome-functional-annotation"><a href="/docs/metagenome-function/">Metagenome functional annotation</a></h4> </article> </div> </main><!-- Footer --> <footer class="footer-chulapa text-center mt-0 pt-3"> <div class="container"> <div class="row"> <div class="col-xl-10 offset-xl-1"><p class="mt-2 mb-3">&copy; 2026 LangilleLab</p> <!-- Do not remove this in order to give attributions --> <p class="chulapa-footer-brand">Powered by <a href="https://dieghernan.github.io/chulapa"> <span class="chulapa">Chulapa</span> Jekyll Theme</a><br><b>Focal</b> skin by <a href="https://github.com/dieghernan">dieghernan</a></p> <!-- End attributions --> </div> </div> </div> </footer> <!-- Footer --> <!-- JS, Popper.js, and jQuery --> <script src="https://code.jquery.com/jquery-3.5.1.slim.min.js" 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