CsvToFHIR/tests/resources/data-contract/data-contract.json at main · LinuxForHealth/CsvToFHIR · GitHub

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{
  "general": {
    "timeZone": "US/Eastern",
    "tenantId": "sample-tenant",
    "streamType": "live",
    "emptyFieldValues": [
      "empty",
      "\\n"
    ]
  },
  "fileDefinitions": {
    "Patient": {
      "valueDelimiter": ",",
      "resourceType": "Patient",
      "groupByKey": "patientId",
      "tasks": [
        {
          "name": "add_constant",
          "params": {
            "name": "ssnSystem",
            "value": "http://hl7.org/fhir/sid/us-ssn"
          }
        },
        {
          "name": "format_date",
          "params": {
            "columns": [
              "dateOfBirth"
            ],
            "date_format": "%Y-%m-%d"
          }
        },
        {
          "name": "map_codes",
          "params": {
            "code_map": {
              "sex": {
                "default": "unknown",
                "F": "female",
                "M": "male",
                "O": "other"
              }
            }
          }
        },
        {
          "name": "map_codes",
          "comment": "Maps state to abbreviation",
          "params": {
            "code_map": {
              "state": "states.csv"
            }
          }
        },
        {
          "name": "rename_columns",
          "params": {
            "column_map": {
              "patientId": "patientInternalId",
              "hospitalId": "assigningAuthority",
              "givenName": "nameFirstMiddle",
              "familyName": "nameLast",
              "sex": "gender",
              "dateOfBirth": "birthDate"
            }
          }
        }
      ]
    }
  }
}