SpikeAgent/environment.linux.yml at main · LiuLab-Bioelectronics-Harvard/SpikeAgent · GitHub

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name: spike_agent
channels:
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - asttokens=2.4.1=pyhd8ed1ab_0
  - bzip2=1.0.8=hd590300_5
  - ca-certificates=2024.2.2=hbcca054_0
  - comm=0.2.1=pyhd8ed1ab_0
  - debugpy=1.8.1=py310hc6cd4ac_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - exceptiongroup=1.2.0=pyhd8ed1ab_2
  - executing=2.0.1=pyhd8ed1ab_0
  - importlib-metadata=7.0.1=pyha770c72_0
  - importlib_metadata=7.0.1=hd8ed1ab_0
  - ipykernel=6.29.3=pyhd33586a_0
  - ipython=8.22.1=pyh707e725_0
  - jedi=0.19.1=pyhd8ed1ab_0
  - jupyter_client=8.6.0=pyhd8ed1ab_0
  - jupyter_core=5.7.1=py310hff52083_0
  - ld_impl_linux-64=2.40=h41732ed_0
  - libffi=3.4.4=h6a678d5_1
  - libgcc-ng=13.2.0=h807b86a_5
  - libgomp=13.2.0=h807b86a_5
  - libnsl=2.0.1=hd590300_0
  - libsodium=1.0.18=h36c2ea0_1
  - libsqlite=3.45.1=h2797004_0
  - libstdcxx-ng=13.2.0=h7e041cc_5
  - libuuid=2.38.1=h0b41bf4_0
  - libxcrypt=4.4.36=hd590300_1
  - libzlib=1.2.13=hd590300_5
  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
  - ncurses=6.4=h59595ed_2
  - nest-asyncio=1.6.0=pyhd8ed1ab_0
  - openssl=3.2.1=hd590300_0
  - packaging=23.2=pyhd8ed1ab_0
  - parso=0.8.3=pyhd8ed1ab_0
  - pexpect=4.9.0=pyhd8ed1ab_0
  - pickleshare=0.7.5=py_1003
  - pip=24.0=pyhd8ed1ab_0
  - platformdirs=4.2.0=pyhd8ed1ab_0
  - prompt-toolkit=3.0.42=pyha770c72_0
  - psutil=5.9.8=py310h2372a71_0
  - ptyprocess=0.7.0=pyhd3deb0d_0
  - pure_eval=0.2.2=pyhd8ed1ab_0
  - pygments=2.17.2=pyhd8ed1ab_0
  - python=3.10.13=hd12c33a_1_cpython
  - python-dateutil=2.8.2=pyhd8ed1ab_0
  - python_abi=3.10=4_cp310
  - pyzmq=25.1.2=py310h795f18f_0
  - readline=8.2=h8228510_1
  - setuptools=69.1.1=pyhd8ed1ab_0
  - six=1.16.0=pyh6c4a22f_0
  - sqlite=3.45.1=h2c6b66d_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - tk=8.6.13=noxft_h4845f30_101
  - tornado=6.4=py310h2372a71_0
  - traitlets=5.14.1=pyhd8ed1ab_0
  - typing_extensions=4.10.0=pyha770c72_0
  - wcwidth=0.2.13=pyhd8ed1ab_0
  - wheel=0.42.0=pyhd8ed1ab_0
  - xz=5.4.6=h5eee18b_0
  - zeromq=4.3.5=h59595ed_1
  - zipp=3.17.0=pyhd8ed1ab_0
  - zlib=1.2.13=hd590300_5
  - pip:
      - numpy
      - pandas
      - streamlit>=1.41.1
      - langchain>=0.3.11
      - langchain-core>=0.3.24
      - langchain-openai>=0.2.12
      - langchain-community>=0.3.11
      - openai>=1.57.4
      - python-dotenv>=1.0.1
      - streamlit-audiorec>=0.1.3
      - tiktoken>=0.8.0
      - plotly
      - scipy
      - sounddevice
      - soundfile
      - pydub
      - langgraph
      - langchain_experimental
      - langchain_google_genai
      - langchain_anthropic
      - audio_recorder_streamlit
      - spikeinterface==0.98.2
      - mountainsort5
      - scikit-learn
      - matplotlib
      - seaborn
      - jupyter
      - tqdm
      - probeinterface
      - kilosort
      - mountainsort4
      - torch