Update excluded paths in .fortlsrc

Removed excluded paths from .fortlsrc configuration.

Author: sbryngelson

.fortlsrc

@@ -10,10 +10,6 @@
         "benchmarks/",
         "examples/",
         "tests/",
-        "misc/",
-        "src/pre_process/include/2dHardcodedIC.fpp",
-        "src/pre_process/include/3dHardcodedIC.fpp",
-        "src/pre_process/include/ExtrusionHardcodedIC.fpp",
         "**/m_nvtx*",
         "**/syscheck.fpp"
     ],