Deps: Move xarray, nc, and h5 deps into all

Xarray leverages netcdf and h5 libraries behind the scenes. Historically
it is better for MHKiT to manage the versions for these libraries vs
latest because of subtle breaking changes.

This moves the deps into all because all data functions in mhkit support
xarray output and thus require all the h5, nc libraries.

Author: simmsa

pyproject.toml

@@ -21,11 +21,17 @@ classifiers = [
 ]
 requires-python = ">=3.10"
 dependencies = [
+    # MHKiT-Python uses xarray everywhere, which leverages netcdf and h5 behind the
+    # scenes. xarray, netcdf4, and h5 dependencies should all be synced to avoid
+    # compatibility issues with individual modules.
+    "xarray>=2024.6.0",
+    "netCDF4>=1.7.1.post1",
+    "h5py>=3.11.0",
+    "h5pyd>=0.18.0",
     "numpy>=2.0.0",
     "numexpr>=2.10.0",
     "pandas>=2.2.2,<3.0",
     "scipy>=1.14.0",
-    "xarray>=2024.6.0",
     "matplotlib>=3.9.1",
     "pecos>=0.3.0",
     "requests",
@@ -36,28 +42,22 @@ dependencies = [
 wave = [
     "scikit-learn>=1.5.1",
     "statsmodels>=0.14.2",
-    "netCDF4>=1.7.1.post1",
     "pytz",
     "NREL-rex>=0.2.63",
     "beautifulsoup4",
     "bottleneck",
     "lxml",
-    "h5py>=3.11.0",
-    "h5pyd>=0.18.0",
 ]
 
 tidal = [
-    "netCDF4>=1.7.1.post1",
     "bottleneck",
 ]
 
 river = [
-    "netCDF4>=1.7.1.post1",
     "bottleneck",
 ]
 
 dolfyn = [
-    "netCDF4>=1.7.1.post1",
     "cartopy",
 ]