Deployed 05eb5dc with MkDocs version: 1.6.1

Author: PierreMarza

404.html

@@ -327,6 +327,29 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="/thunder/data_loading/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    Data Loading (Linear Probing & Segmentation)
+    
+  </span>
+  
+
+      </a>
+    </li>
+  
+
+              
+            
+              
+                
+  
+  
+  
+  
     <li class="md-nav__item">
       <a href="/thunder/examples/" class="md-nav__link">
 

api/index.html

@@ -336,6 +336,29 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../data_loading/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    Data Loading (Linear Probing & Segmentation)
+    
+  </span>
+  
+
+      </a>
+    </li>
+  
+
+              
+            
+              
+                
+  
+  
+  
+  
     <li class="md-nav__item">
       <a href="../examples/" class="md-nav__link">
 
@@ -749,7 +772,7 @@ <h3 id="thunder.benchmark.benchmark" class="doc doc-heading">
   <summary>where options are</summary>
   <ul>
 <li>dataset: <em>bach</em>, <em>bracs</em>, <em>break_his</em>, <em>ccrcc</em>, <em>crc</em>, <em>esca</em>, <em>mhist</em>, <em>ocelot</em>, <em>pannuke</em>, <em>patch_camelyon</em>, <em>segpath_epithelial</em>, <em>segpath_lymphocytes</em>, <em>tcga_crc_msi</em>, <em>tcga_tils</em>, <em>tcga_uniform</em>, <em>wilds</em></li>
-<li>model: <em>hiboub</em>, <em>hiboul</em>, <em>hoptimus0</em>, <em>hoptimus1</em>, <em>midnight</em>, <em>phikon</em>, <em>phikon2</em>, <em>uni</em>, <em>uni2h</em>, <em>virchow</em>, <em>virchow2</em>, <em>conch</em>, <em>titan</em>, <em>keep</em>, <em>musk</em>, <em>plip</em>, <em>quiltnetb32</em>, <em>dinov2base</em>, <em>dinov2large</em>, <em>vitbasepatch16224in21k</em>, <em>vitlargepatch16224in21k</em>, <em>clipvitbasepatch32</em>, <em>clipvitlargepatch14</em></li>
+<li>model: <em>hiboub</em>, <em>hiboul</em>, <em>hoptimus0</em>, <em>hoptimus1</em>, <em>genbio-pathfm</em>, <em>midnight</em>, <em>phikon</em>, <em>phikon2</em>, <em>uni</em>, <em>uni2h</em>, <em>virchow</em>, <em>virchow2</em>, <em>conch</em>, <em>titan</em>, <em>keep</em>, <em>musk</em>, <em>plip</em>, <em>quiltnetb32</em>, <em>dinov2base</em>, <em>dinov2large</em>, <em>vitbasepatch16224in21k</em>, <em>vitlargepatch16224in21k</em>, <em>clipvitbasepatch32</em>, <em>clipvitlargepatch14</em></li>
 <li>task: <em>adversarial_attack</em>, <em>alignment_scoring</em>, <em>image_retrieval</em>, <em>knn</em>, <em>linear_probing</em>, <em>pre_computing_embeddings</em>, <em>segmentation</em>, <em>simple_shot</em>, <em>transformation_invariance</em>, <em>zero_shot_vlm</em></li>
 <li>loading_mode: <em>online_loading</em>, <em>image_pre_loading</em>, <em>embedding_pre_loading</em></li>
 </ul>
@@ -1033,7 +1056,7 @@ <h3 id="thunder.benchmark.benchmark" class="doc doc-heading">
 
 <span class="sd">    where options are:</span>
 <span class="sd">        - dataset: *bach*, *bracs*, *break_his*, *ccrcc*, *crc*, *esca*, *mhist*, *ocelot*, *pannuke*, *patch_camelyon*, *segpath_epithelial*, *segpath_lymphocytes*, *tcga_crc_msi*, *tcga_tils*, *tcga_uniform*, *wilds*</span>
-<span class="sd">        - model: *hiboub*, *hiboul*, *hoptimus0*, *hoptimus1*, *midnight*, *phikon*, *phikon2*, *uni*, *uni2h*, *virchow*, *virchow2*, *conch*, *titan*, *keep*, *musk*, *plip*, *quiltnetb32*, *dinov2base*, *dinov2large*, *vitbasepatch16224in21k*, *vitlargepatch16224in21k*, *clipvitbasepatch32*, *clipvitlargepatch14*</span>
+<span class="sd">        - model: *hiboub*, *hiboul*, *hoptimus0*, *hoptimus1*, *genbio-pathfm*, *midnight*, *phikon*, *phikon2*, *uni*, *uni2h*, *virchow*, *virchow2*, *conch*, *titan*, *keep*, *musk*, *plip*, *quiltnetb32*, *dinov2base*, *dinov2large*, *vitbasepatch16224in21k*, *vitlargepatch16224in21k*, *clipvitbasepatch32*, *clipvitlargepatch14*</span>
 <span class="sd">        - task: *adversarial_attack*, *alignment_scoring*, *image_retrieval*, *knn*, *linear_probing*, *pre_computing_embeddings*, *segmentation*, *simple_shot*, *transformation_invariance*, *zero_shot_vlm*</span>
 <span class="sd">        - loading_mode: *online_loading*, *image_pre_loading*, *embedding_pre_loading*</span>
 
@@ -1437,6 +1460,7 @@ <h3 id="thunder.download_models" class="doc doc-heading">
 <li>hoptimus0</li>
 <li>h0mini</li>
 <li>hoptimus1</li>
+<li>genbio-pathfm</li>
 <li>provgigapath</li>
 <li>conch</li>
 <li>titan</li>
@@ -1499,11 +1523,7 @@ <h3 id="thunder.download_models" class="doc doc-heading">
 
             <details class="quote">
               <summary>Source code in <code>src/thunder/models/download.py</code></summary>
-              <div class="highlight"><table class="highlighttable"><tr><td class="linenos"><div class="linenodiv"><pre><span></span><span class="normal">148</span>
-<span class="normal">149</span>
-<span class="normal">150</span>
-<span class="normal">151</span>
-<span class="normal">152</span>
+              <div class="highlight"><table class="highlighttable"><tr><td class="linenos"><div class="linenodiv"><pre><span></span><span class="normal">152</span>
 <span class="normal">153</span>
 <span class="normal">154</span>
 <span class="normal">155</span>
@@ -1546,7 +1566,12 @@ <h3 id="thunder.download_models" class="doc doc-heading">
 <span class="normal">192</span>
 <span class="normal">193</span>
 <span class="normal">194</span>
-<span class="normal">195</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span><span class="w"> </span><span class="nf">download_models</span><span class="p">(</span><span class="n">models</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span> <span class="nb">str</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
+<span class="normal">195</span>
+<span class="normal">196</span>
+<span class="normal">197</span>
+<span class="normal">198</span>
+<span class="normal">199</span>
+<span class="normal">200</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span><span class="w"> </span><span class="nf">download_models</span><span class="p">(</span><span class="n">models</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="n">List</span><span class="p">[</span><span class="nb">str</span><span class="p">],</span> <span class="nb">str</span><span class="p">])</span> <span class="o">-&gt;</span> <span class="kc">None</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;Download model checkpoints from Hugging Face.</span>
 
 <span class="sd">    The list of all available models:</span>
@@ -1557,6 +1582,7 @@ <h3 id="thunder.download_models" class="doc doc-heading">
 <span class="sd">        * hoptimus0</span>
 <span class="sd">        * h0mini</span>
 <span class="sd">        * hoptimus1</span>
+<span class="sd">        * genbio-pathfm</span>
 <span class="sd">        * provgigapath</span>
 <span class="sd">        * conch</span>
 <span class="sd">        * titan</span>
@@ -2017,6 +2043,7 @@ <h3 id="thunder.models.get_model_from_name" class="doc doc-heading">
 <li>hoptimus0</li>
 <li>h0mini</li>
 <li>hoptimus1</li>
+<li>genbio-pathfm</li>
 <li>provgigapath</li>
 <li>conch</li>
 <li>titan</li>
@@ -2147,11 +2174,7 @@ <h3 id="thunder.models.get_model_from_name" class="doc doc-heading">
 
             <details class="quote">
               <summary>Source code in <code>src/thunder/models/pretrained_models.py</code></summary>
-              <div class="highlight"><table class="highlighttable"><tr><td class="linenos"><div class="linenodiv"><pre><span></span><span class="normal">386</span>
-<span class="normal">387</span>
-<span class="normal">388</span>
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-<span class="normal">390</span>
+              <div class="highlight"><table class="highlighttable"><tr><td class="linenos"><div class="linenodiv"><pre><span></span><span class="normal">390</span>
 <span class="normal">391</span>
 <span class="normal">392</span>
 <span class="normal">393</span>
@@ -2217,7 +2240,12 @@ <h3 id="thunder.models.get_model_from_name" class="doc doc-heading">
 <span class="normal">453</span>
 <span class="normal">454</span>
 <span class="normal">455</span>
-<span class="normal">456</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span><span class="w"> </span><span class="nf">get_model_from_name</span><span class="p">(</span><span class="n">model_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">device</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
+<span class="normal">456</span>
+<span class="normal">457</span>
+<span class="normal">458</span>
+<span class="normal">459</span>
+<span class="normal">460</span>
+<span class="normal">461</span></pre></div></td><td class="code"><div><pre><span></span><code><span class="k">def</span><span class="w"> </span><span class="nf">get_model_from_name</span><span class="p">(</span><span class="n">model_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">device</span><span class="p">:</span> <span class="nb">str</span><span class="p">):</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;Loading pretrained model from input name.</span>
 
 <span class="sd">    The list of all available models:</span>
@@ -2228,6 +2256,7 @@ <h3 id="thunder.models.get_model_from_name" class="doc doc-heading">
 <span class="sd">        * hoptimus0</span>
 <span class="sd">        * h0mini</span>
 <span class="sd">        * hoptimus1</span>
+<span class="sd">        * genbio-pathfm</span>
 <span class="sd">        * provgigapath</span>
 <span class="sd">        * conch</span>
 <span class="sd">        * titan</span>

custom_config/index.html

@@ -340,6 +340,29 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../data_loading/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    Data Loading (Linear Probing & Segmentation)
+    
+  </span>
+  
+
+      </a>
+    </li>
+  
+
+              
+            
+              
+                
+  
+  
+  
+  
     <li class="md-nav__item">
       <a href="../examples/" class="md-nav__link">
 

custom_dataset/index.html

@@ -335,6 +335,29 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../data_loading/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    Data Loading (Linear Probing & Segmentation)
+    
+  </span>
+  
+
+      </a>
+    </li>
+  
+
+              
+            
+              
+                
+  
+  
+  
+  
     <li class="md-nav__item">
       <a href="../examples/" class="md-nav__link">
 

custom_model/index.html

@@ -335,6 +335,29 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../data_loading/" class="md-nav__link">
+        
+  
+  
+  <span class="md-ellipsis">
+    Data Loading (Linear Probing & Segmentation)
+    
+  </span>
+  
+
+      </a>
+    </li>
+  
+
+              
+            
+              
+                
+  
+  
+  
+  
     <li class="md-nav__item">
       <a href="../examples/" class="md-nav__link">