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fix typo in norepi name, add sepsis3 to skip list #3

fix typo in norepi name, add sepsis3 to skip list

fix typo in norepi name, add sepsis3 to skip list #3

name: Pre-release concept build on mimiciv_derived
# Full BigQuery build of the derived concepts.
# Rebuilds mimiciv_derived but does NOT copy to the versioned schema.
on:
release:
types: [prereleased]
# TEMP: test on push to branch
push:
branches:
- alistair/more_gh_action_shenanigans
jobs:
build-and-validate:
runs-on: ubuntu-latest
permissions:
contents: 'read'
id-token: 'write'
steps:
- name: Check out repository code
uses: actions/checkout@v4
- id: 'auth'
uses: 'google-github-actions/auth@v2'
with:
service_account: 'mimic-code@physionet-data.iam.gserviceaccount.com'
workload_identity_provider: 'projects/569883598760/locations/global/workloadIdentityPools/github/providers/mimic-code'
- name: 'Set up Cloud SDK'
uses: 'google-github-actions/setup-gcloud@v2'
with:
version: '>= 363.0.0'
- name: Run make_concepts
run: |
echo "Generating tables on BigQuery mimiciv_derived"
cd mimic-iv/concepts
bash make_concepts.sh
- name: Validate concepts
run: |
echo "Validating built concepts in mimiciv_derived"
bash mimic-iv/concepts/validate_concepts.sh mimiciv_derived