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fix(mimic-iv): exclude C4A from Charlson malignant_cancer mapping #226

fix(mimic-iv): exclude C4A from Charlson malignant_cancer mapping

fix(mimic-iv): exclude C4A from Charlson malignant_cancer mapping #226

Workflow file for this run

name: transpile checks
on:
- pull_request
jobs:
# Unit tests for the transpiler.
unit-tests:
name: Transpile unit tests
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v7
- uses: actions/setup-python@v7
with:
python-version: "3.10"
- name: Install locked dependencies
run: pip install -r requirements-lock.txt
- name: Install package
run: pip install -e . --no-deps
- name: Run transpiler unit tests
run: pytest tests/test_transpile.py -q
generated-up-to-date:
name: Check cross-dialect concepts match BQ
runs-on: ubuntu-latest
permissions:
contents: read
checks: write
steps:
- uses: actions/checkout@v7
- uses: actions/setup-python@v7
with:
python-version: "3.12"
- name: Install locked dependencies
run: pip install -r requirements-lock.txt
- name: Install package
run: pip install -e . --no-deps
- uses: ./.github/actions/transpile-concepts
with:
dialect: postgres
- uses: ./.github/actions/transpile-concepts
with:
dialect: duckdb
- uses: ./.github/actions/transpile-concepts
with:
dialect: postgres
project: mimic-iii
- uses: ./.github/actions/transpile-concepts
with:
dialect: duckdb
project: mimic-iii
- uses: ./.github/actions/check-concepts-up-to-date
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
paths: >-
mimic-iv/concepts_postgres mimic-iv/concepts_duckdb
mimic-iii/concepts_postgres mimic-iii/concepts_duckdb