lint sql

Author: alistairewj

mimic-iv/concepts/firstday/first_day_rrt.sql

@@ -5,7 +5,8 @@ SELECT
     , ie.stay_id
     , MAX(dialysis_present) AS dialysis_present
     , MAX(dialysis_active) AS dialysis_active
-    , STRING_AGG(DISTINCT dialysis_type, ', ' ORDER BY dialysis_type) AS dialysis_type
+    , STRING_AGG(DISTINCT dialysis_type, ', ' ORDER BY dialysis_type)
+        AS dialysis_type
 FROM `physionet-data.mimiciv_icu.icustays` ie
 LEFT JOIN `physionet-data.mimiciv_derived.rrt` rrt
     ON ie.stay_id = rrt.stay_id

mimic-iv/concepts/measurement/bg.sql

@@ -200,7 +200,7 @@ SELECT
                 OR pco2 IS NULL
                 THEN NULL
             WHEN fio2 IS NOT NULL
-                -- multiple by 100 because fio2 is in a % but should be a fraction
+                -- multiple by 100 so fio2 goes % -> fraction
                 THEN (fio2 / 100) * (760 - 47) - (pco2 / 0.8) - po2
             WHEN fio2_chartevents IS NOT NULL
                 THEN (fio2_chartevents / 100) * (760 - 47) - (pco2 / 0.8) - po2

mimic-iv/concepts/measurement/rhythm.sql

@@ -3,8 +3,8 @@ SELECT
     ce.subject_id
     , ce.charttime
     , STRING_AGG(
-        DISTINCT CASE WHEN itemid = 220048 THEN value ELSE NULL END,
-        '; ' ORDER BY CASE WHEN itemid = 220048 THEN value ELSE NULL END
+        DISTINCT CASE WHEN itemid = 220048 THEN value ELSE NULL END
+        , '; ' ORDER BY CASE WHEN itemid = 220048 THEN value ELSE NULL END
     ) AS heart_rhythm
     , MAX(CASE WHEN itemid = 224650 THEN value ELSE NULL END) AS ectopy_type
     , MAX(

mimic-iv/concepts/measurement/urine_output_rate.sql

@@ -49,21 +49,27 @@ WITH tm AS (
             THEN iosum.urineoutput
             ELSE NULL END) AS urineoutput_6hr
         , ROUND(CAST(
-            SUM(CASE WHEN DATETIME_DIFF(io.charttime, iosum.charttime, HOUR) <= 5
+            SUM(
+                CASE
+                    WHEN DATETIME_DIFF(io.charttime, iosum.charttime, HOUR) <= 5
                 THEN iosum.tm_since_last_uo
                 ELSE NULL END) / 60.0 AS NUMERIC
         ), 6) AS uo_tm_6hr
         , SUM(CASE WHEN DATETIME_DIFF(io.charttime, iosum.charttime, HOUR) <= 11
             THEN iosum.urineoutput
             ELSE NULL END) AS urineoutput_12hr
         , ROUND(CAST(
-            SUM(CASE WHEN DATETIME_DIFF(io.charttime, iosum.charttime, HOUR) <= 11
+            SUM(
+                CASE
+                    WHEN
+                        DATETIME_DIFF(io.charttime, iosum.charttime, HOUR) <= 11
                 THEN iosum.tm_since_last_uo
                 ELSE NULL END) / 60.0 AS NUMERIC
         ), 6) AS uo_tm_12hr
         -- 24 hours
         , SUM(iosum.urineoutput) AS urineoutput_24hr
-        , ROUND(CAST(SUM(iosum.tm_since_last_uo) / 60.0 AS NUMERIC), 6) AS uo_tm_24hr
+        , ROUND(CAST(SUM(iosum.tm_since_last_uo) / 60.0 AS NUMERIC), 6)
+            AS uo_tm_24hr
 
     FROM uo_tm io
     -- this join gives you all UO measurements over a 24 hour period