add missing transpiled concept

Author: alistairewj

mimic-iv/concepts_postgres/treatment/code_status.sql

@@ -0,0 +1,75 @@
+-- THIS SCRIPT IS AUTOMATICALLY GENERATED. DO NOT EDIT IT DIRECTLY.
+DROP TABLE IF EXISTS mimiciv_derived.code_status; CREATE TABLE mimiciv_derived.code_status AS
+/* This query extracts code status with the time at which the */ /* code status was documented. */
+WITH t1 AS (
+  /*
+There are five distinct values for the code status order in the ICU data:
+1 DNR / DNI
+2	DNI (do not intubate)
+3	Comfort measures only
+4	Full code
+5	DNR (do not resuscitate)
+ */
+  SELECT
+    subject_id,
+    hadm_id,
+    stay_id,
+    charttime, /* coalesce the values */
+    CASE WHEN value IN ('Full code') THEN 1 ELSE 0 END AS fullcode,
+    CASE WHEN value IN ('Comfort measures only') THEN 1 ELSE 0 END AS cmo,
+    CASE WHEN value IN ('DNI (do not intubate)', 'DNR / DNI') THEN 1 ELSE 0 END AS dni,
+    CASE WHEN value IN ('DNR (do not resuscitate)', 'DNR / DNI') THEN 1 ELSE 0 END AS dnr
+  FROM mimiciv_icu.chartevents
+  WHERE
+    itemid IN (223758)
+), poe /* Provider order entry contains hospital wide orders for code status changes */ /* Interestingly, it does not contain comfort measures only orders */ AS (
+  SELECT
+    p.subject_id,
+    p.hadm_id,
+    ie.stay_id,
+    p.ordertime,
+    CASE
+      WHEN pd.field_value = 'Resuscitate (Full code)'
+      THEN 1
+      WHEN pd.field_value = 'Full code  (attempt resuscitation)'
+      THEN 1
+      ELSE 0
+    END AS fullcode,
+    CASE
+      WHEN pd.field_value = 'DNAR (DO NOT attempt resuscitation for cardiac arrest) '
+      THEN 1 /* noqa */
+      WHEN pd.field_value = 'Do not resuscitate (DNR/DNI)'
+      THEN 1
+      ELSE 0
+    END AS dnr,
+    CASE WHEN pd.field_value = 'Do not resuscitate (DNR/DNI)' THEN 1 ELSE 0 END AS dni
+  FROM mimiciv_hosp.poe AS p
+  INNER JOIN mimiciv_hosp.poe_detail AS pd
+    ON p.poe_id = pd.poe_id
+  LEFT JOIN mimiciv_icu.icustays AS ie
+    ON p.hadm_id = ie.hadm_id AND p.ordertime >= ie.intime AND p.ordertime <= ie.outtime
+  WHERE
+    p.order_type = 'General Care' AND order_subtype = 'Code status'
+)
+/* Merge together code status from ICU data */ /* with code status from provider order entry */
+SELECT
+  t1.subject_id,
+  t1.hadm_id,
+  t1.stay_id,
+  t1.charttime,
+  t1.fullcode,
+  t1.cmo,
+  t1.dni,
+  t1.dnr
+FROM t1
+UNION ALL
+SELECT
+  poe.subject_id,
+  poe.hadm_id,
+  poe.stay_id,
+  poe.ordertime AS charttime,
+  poe.fullcode,
+  0 AS cmo,
+  poe.dni,
+  poe.dnr
+FROM poe